[Home] | [Total List]

[180824_at]

Description C05C8.2 /REP_DB=WormBase Gene ID /WP=CE07920 /TR=O16311 /GB=AAB65369.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 07      4grp_high_8_8 > 22      6grp_highest_nonorm > 83      6grp_total > 76      4grp_total > 17      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 521.6
(-3)
P 		589.4
(-1.8)
P 		519.1
(-3)
P 		860.2
(3)
P 		341
B 483.7
(-3)
P 		673.3
(-0.2)
P 		580.1
(-1.6)
P 		896
(3)
P 		412
C 562.7
(-3)
P 		614.8
(-2.1)
P 		634.8
(-1.8)
P 		913
(3)
P 		350
avr 522.7
(-3) 		625.8
(-1.3) 		578
(-2.1) 		889.7
(3) 		367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 304.3
(-3)
P 		384.6
(-1.2)
P 		434.8
(-0.1)
P 		470.7
(0.7)
P 		336
(-2.3)
P 		577.4
(3)
P 		273
B 318.9
(-3)
P 		412
(-0.9)
P 		388.9
(-1.4)
P 		336.8
(-2.6)
P 		454.2
(0.1)
P 		582.6
(3)
P 		264
C 363.4
(-2.2)
P 		388.6
(-1.7)
P 		316.8
(-3)
P 		543.3
(1.1)
P 		354.6
(-2.3)
P 		651.5
(3)
P 		335
avr 328.9
(-3) 		395.1
(-1.6) 		380.2
(-1.9) 		450.3
(-0.4) 		381.6
(-1.8) 		603.8
(3) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 189.9
(3)
P 		127.9
(-2.8)
P 		135.7
(-2.1)
P 		125.9
(-3)
P 		64
B 154.3
(-0.9)
P 		166.3
(0.4)
P 		134.4
(-3)
P 		190.9
(3)
P 		57
C 186.3
(-0.1)
P 		176.8
(-1)
P 		221.3
(3)
P 		154
(-3)
P 		67
avr 176.8
(3) 		157
(-3) 		163.8
(-0.9) 		156.9
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 56.1
(-3)
P 		136.8
(2.7)
P 		94.7
(-0.3)
P 		119.4
(1.5)
P 		101.4
(0.2)
P 		140.6
(3)
P 		85
B 111
(-2)
P 		137.1
(-0.8)
P 		94.4
(-2.8)
P 		89.2
(-3)
P 		184.5
(1.5)
P 		217.3
(3)
P 		128
C 134.7
(-0.6)
P 		118.6
(-1.3)
P 		80.6
(-3)
P 		109.3
(-1.7)
P 		114.7
(-1.5)
P 		218.1
(3)
P 		138
avr 100.6
(-2.4) 		130.8
(-0.6) 		89.9
(-3) 		106
(-2.1) 		133.5
(-0.4) 		192
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11422
Sequence Type Exemplar sequence
Representative Public ID C05C8.2 NCBI
Target Description C05C8.2 /REP_DB=WormBase Gene ID /WP=CE07920 /TR=O16311 /GB=AAB65369.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072436 NCBI Caenorhabditis elegans C05C8.2 (C05C8.2) mRNA, complete cds. 11/11 None
SNAP00000024624 ENSEMBL cdna:SNAP chromosome:CEL140:V:7233783:7239687:1 11/11 None
GENEFINDER00000024636 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7233783:7235202:1 11/11 None
C05C8.2 ENSEMBL cdna:known chromosome:CEL140:V:7233783:7235325:1 gene:C05C8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7233783-7235203(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C8.2
Entrez Gene 179115 Entrez gene
SwissProt O16311 EMBL-EBI
WormBase CE07920 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246060_AT expressed protein at
CANINE:1591386_AT similar to HIV-1 Rev binding protein 2 (Rev interacting protein 1) (Rip-1) cfa
CANINE_2:CFA.3955.1.A1_S_AT similar to HIV-1 Rev binding protein 2 (Rev interacting protein 1) (Rip-1) cfa
DROSOPHILA_2:1632223_AT dribble dm
DROSGENOME1:154276_AT dribble dm
CHICKEN:GGAAFFX.12247.1.S1_S_AT HIV-1 rev binding protein 2 gga
HG-U133_PLUS_2:235038_AT HIV-1 rev binding protein 2 hs
HG-U133B:235038_AT HIV-1 rev binding protein 2 hs
HG-U133_PLUS_2:232441_AT HIV-1 rev binding protein 2 hs
HG-U133B:232441_AT HIV-1 rev binding protein 2 hs
HG-U133A:203203_S_AT HIV-1 rev binding protein 2 hs
HG-U133_PLUS_2:203203_S_AT HIV-1 rev binding protein 2 hs
HG-U133A_2:203203_S_AT HIV-1 rev binding protein 2 hs
HU35KSUBD:RC_H04339_AT HIV-1 rev binding protein 2 hs
HUGENEFL:U55766_AT HIV-1 rev binding protein 2 hs
U133_X3P:G5902047_3P_A_AT HIV-1 rev binding protein 2 hs
U133_X3P:HS.269857.0.S1_3P_X_AT HIV-1 rev binding protein 2 hs
U133_X3P:HS.165165.0.A1_3P_X_AT HIV-1 rev binding protein 2 hs
U133_X3P:HS.165165.0.A1_3P_AT HIV-1 rev binding protein 2 hs
U133_X3P:HS.154762.0.A2_3P_AT HIV-1 rev binding protein 2 hs
HG-U133A_2:203202_AT HIV-1 rev binding protein 2 hs
HG-FOCUS:203202_AT HIV-1 rev binding protein 2 hs
HG-U133_PLUS_2:203202_AT HIV-1 rev binding protein 2 hs
HG-U133A:203202_AT HIV-1 rev binding protein 2 hs
HG-U95AV2:40250_AT HIV-1 rev binding protein 2 hs
HG-U95D:78418_AT HIV-1 rev binding protein 2 hs
HG-U95E:85580_AT HIV-1 rev binding protein 2 hs
HU35KSUBD:RC_R43521_AT HIV-1 rev binding protein 2 hs
U133_X3P:HS.100911.0.S1_3P_X_AT HIV-1 rev binding protein 2 hs
U133_X3P:HS.100911.0.S1_3P_AT HIV-1 rev binding protein 2 hs
U133_X3P:233515_3P_AT HIV-1 rev binding protein 2 hs
HG-U133_PLUS_2:233515_AT HIV-1 rev binding protein 2 hs
HG-U133B:233515_AT HIV-1 rev binding protein 2 hs
HG-U95C:57609_AT HIV-1 rev binding protein 2 hs
HG-U95E:84181_AT HIV-1 rev binding protein 2 hs
HG-U95D:91237_AT HIV-1 rev binding protein 2 hs
HU35KSUBC:RC_AA399462_AT HIV-1 rev binding protein 2 hs
MG-U74AV2:98090_AT HIV-1 Rev binding protein 2 mm
MG-U74AV2:160427_AT HIV-1 Rev binding protein 2 mm
MG-U74BV2:164603_F_AT HIV-1 Rev binding protein 2 mm
MOE430A:1452658_AT HIV-1 Rev binding protein 2 mm
MOUSE430A_2:1452658_AT HIV-1 Rev binding protein 2 mm
MOUSE430_2:1452658_AT HIV-1 Rev binding protein 2 mm
MOE430A:1428084_AT HIV-1 Rev binding protein 2 mm
MOUSE430A_2:1428084_AT HIV-1 Rev binding protein 2 mm
MOUSE430_2:1428084_AT HIV-1 Rev binding protein 2 mm
MOE430B:1420139_S_AT HIV-1 Rev binding protein 2 mm
MOUSE430_2:1420139_S_AT HIV-1 Rev binding protein 2 mm
MU19KSUBA:TC19493_AT HIV-1 Rev binding protein 2, mRNA (cDNA clone IMAGE:30603206) mm
MU19KSUBA:TC20845_AT HIV-1 Rev binding protein 2, mRNA (cDNA clone IMAGE:30603206) mm
RAE230A:1377400_AT HIV-1 Rev binding protein 2 (predicted) rn
RAT230_2:1377400_AT HIV-1 Rev binding protein 2 (predicted) rn
RG-U34C:RC_AI071242_AT HIV-1 Rev binding protein 2 (predicted) rn
YEAST_2:1771324_AT Essential nucleolar protein required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit Sc
Protein Similarities
Method ID Description E-Value
blast AAB65369 Hypothetical protein C05C8.2 [Caenorhabditis elegans] ref|NP_504837.1| C05C8.2 [Caenorhabditis elegans] 1.0E-176
blast CAE72032 Hypothetical protein CBG19114 [Caenorhabditis briggsae] emb|CAE72028.1| Hypothetical protein CBG19110 [Caenorhabditis briggsae] 1.0E-164
blast BAE27537.1 unnamed protein product [Mus musculus] 8.0E-92
Sequence
Target Sequence 
>C. ELEGANS:180824_AT
gaagcgtagagctcggctaattggaaacgatggtgctaccttgaaagctctcgaattgct
gacacagtgctatgtttgtgttcaaggaggaactgtttgtgctgttggaccgcttgctgg
actgaaacaaatcaatcaaatcgtcactgattgtatgaaaaatattcacccaatctacaa
tattaaaactatgatgatcaaaagggaattatctaaaaatgatgaattgaaagatgcaaa
ctgggatgcttatcttccaaactaccgaaagaaggttcaatctgcaactacaacaaagga
agcaaagaagaagaaggcttacaagatgaagcccaagaaggagttcactccgttcccacc
ggctccagttatgagcaagattgacaagcagattgaaagcggagaatattttattcgcga
gaacgaaagaaagatgaacaaaaagagagcgaaattggaagcatcggcggtgaagactgt
ggaaaaacagaagcaaaagttgaaagtgtatcaagcaaaagaggaagctccgcgagaaaa
acagaacaagaagcgaccgaacgacgcgccgatcgatttggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCGTAGAGCTCGGCTAATTGGA 5 343 501 Antisense
GATGGTGCTACCTTGAAAGCTCTCG 676 407 529 Antisense
AGCTCTCGAATTGCTGACACAGTGC 598 79 546 Antisense
TTGGACCGCTTGCTGGACTGAAACA 650 705 605 Antisense
GAAAAATATTCACCCAATCTACAAT 364 355 657 Antisense
GGGATGCTTATCTTCCAAACTACCG 373 495 743 Antisense
CAAGAAGGAGTTCACTCCGTTCCCA 47 185 834 Antisense
TTCCCACCGGCTCCAGTTATGAGCA 164 697 853 Antisense
AAGCATCGGCGGTGAAGACTGTGGA 446 151 959 Antisense
CAAGAAGCGACCGAACGACGCGCCG 24 183 1047 Antisense
AACGACGCGCCGATCGATTTGGAAA 304 145 1060 Antisense
Sequence Source Affymetrix Proprietary Database