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[180823_at]

Description Y43F8B.9 /REP_DB=WormBase Gene ID /WP=CE21893 /TR=Q9XWX1 /GB=CAA21516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 22      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 227.8
(1.9)
P 		87.5
(-2.5)
A 		72.6
(-3)
A 		263
(3)
P 		190
B 199.7
(0.8)
P 		86.3
(-3)
A 		96.3
(-2.7)
A 		264.1
(3)
P 		178
C 285.5
(3)
P 		113.4
(-2.1)
A 		83.3
(-3)
A 		234.5
(1.5)
P 		202
avr 237.7
(2.4) 		95.7
(-2.6) 		84.1
(-3) 		253.9
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 144
(3)
A 		94.4
(0.4)
A 		73.9
(-0.7)
A 		66.7
(-1.1)
A 		53.1
(-1.8)
A 		29.9
(-3)
A 		114
B 186.3
(3)
P 		51.8
(-2.4)
A 		74
(-1.5)
A 		51.9
(-2.4)
A 		37.9
(-3)
A 		42.9
(-2.8)
A 		148
C 186.9
(3)
P 		11.4
(-3)
A 		39.6
(-2)
A 		54.6
(-1.5)
A 		64.9
(-1.2)
A 		85
(-0.5)
A 		176
avr 172.4
(3) 		52.5
(-3) 		62.5
(-2.5) 		57.7
(-2.7) 		52
(-3) 		52.6
(-3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 82.9
(3)
P 		19
(-3)
A 		19
(-3)
A 		38.5
(-1.2)
P 		64
B 63.7
(3)
P 		21.3
(-3)
A 		22.3
(-2.9)
A 		56.3
(2)
P 		42
C 94.5
(3)
P 		32.6
(-2.7)
A 		29
(-3)
A 		39.5
(-2)
P 		66
avr 80.4
(3) 		24.3
(-2.9) 		23.4
(-3) 		44.8
(-0.7) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 26.6
(1.4)
A 		33.6
(3)
A 		16.1
(-1)
A 		16.9
(-0.8)
A 		16
(-1)
A 		7.3
(-3)
A 		26
B 64.8
(3)
P 		17.2
(-2.6)
A 		18
(-2.5)
A 		13.7
(-3)
A 		15.4
(-2.8)
A 		16
(-2.7)
A 		51
C 69.3
(3)
P 		3.5
(-3)
A 		10.1
(-2.4)
A 		11
(-2.3)
A 		21
(-1.4)
A 		28.5
(-0.7)
A 		66
avr 53.6
(3) 		18.1
(-2.4) 		14.7
(-2.9) 		13.9
(-3) 		17.5
(-2.5) 		17.3
(-2.5) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180823_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13084
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.9 NCBI
Target Description Y43F8B.9 /REP_DB=WormBase Gene ID /WP=CE21893 /TR=Q9XWX1 /GB=CAA21516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075389 NCBI Caenorhabditis elegans Y43F8B.9 (Y43F8B.9) mRNA, complete cds. 11/11 None
SNAP00000027173 ENSEMBL cdna:SNAP chromosome:CEL140:V:19482650:19482980:1 11/11 None
GENEFINDER00000027187 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19482531:19483588:1 11/11 None
Y43F8B.9 ENSEMBL cdna:known chromosome:CEL140:V:19481776:19482980:1 gene:Y43F8B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19482530-19482980(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.9
Entrez Gene 180276 Entrez gene
SwissProt Q9XWX1 EMBL-EBI
WormBase CE21893 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21516 Hypothetical protein Y43F8B.9 [Caenorhabditis elegans] ref|NP_507790.1| Y43F8B.9 [Caenorhabditis elegans] 2.0E-51
blast CAA21516 Hypothetical protein Y43F8B.9 [Caenorhabditis elegans] ref|NP_507790.1| Y43F8B.9 [Caenorhabditis elegans] 1.0E-44
blast CAI79203 Hypothetical protein F55C9.12 [Caenorhabditis elegans] ref|NP_001023983.1| F55C9.12 [Caenorhabditis elegans] 3.0E-14
blast CAI79203 Hypothetical protein F55C9.12 [Caenorhabditis elegans] ref|NP_001023983.1| F55C9.12 [Caenorhabditis elegans] 5.0E-12
Sequence
Target Sequence 
>C. ELEGANS:180823_AT
agcaagctgtgtatccgtcgaaggagtcgtcgacgctacagcccaagtatctgttcgacg
ccagcacgcttgtactgccaatgtgctttgagtgccgcagggccagtcgacaccttgaaa
tggcaatcaatctgtgttccatctgcagggcaaacttcgaggcccaaatagcatcgcgct
tcttcaggcacgacgtacttctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAAGCTGTGTATCCGTCGAAGGA 248 77 95 Antisense
CGAAGGAGTCGTCGACGCTACAGCC 672 251 113 Antisense
ACAGCCCAAGTATCTGTTCGACGCC 710 107 132 Antisense
CAGCACGCTTGTACTGCCAATGTGC 145 205 156 Antisense
GCCAATGTGCTTTGAGTGCCGCAGG 264 277 171 Antisense
GGGCCAGTCGACACCTTGAAATGGC 135 491 194 Antisense
GAAATGGCAATCAATCTGTGTTCCA 607 361 211 Antisense
TCTGTGTTCCATCTGCAGGGCAAAC 601 607 225 Antisense
GCAAACTTCGAGGCCCAAATAGCAT 540 317 244 Antisense
CCAAATAGCATCGCGCTTCTTCAGG 539 275 258 Antisense
TCTTCAGGCACGACGTACTTCTGGT 552 615 275 Antisense
Sequence Source Affymetrix Proprietary Database