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[180822_at] 7TM chemoreceptor, sra family

Description Y40H7A.6 /REP_DB=WormBase Gene ID /WP=CE21817 /TR=Q9XW96 /GB=CAA22070.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 27      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 31.8
(-3)
A 		49.9
(-0.7)
A 		58.8
(0.5)
A 		78.5
(3)
A 		47
B 56.4
(1.2)
A 		62
(3)
A 		43.6
(-3)
A 		49.4
(-1.1)
A 		18
C 53.7
(-0.7)
A 		88
(3)
A 		32.1
(-3)
A 		81.2
(2.3)
A 		56
avr 47.3
(-2.4) 		66.6
(2.3) 		44.8
(-3) 		69.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 43.8
(0.9)
A 		14.7
(-3)
A 		59.5
(3)
A 		39.2
(0.3)
A 		40
(0.4)
A 		21.4
(-2.1)
A 		45
B 36.1
(1.9)
A 		39.6
(2.5)
A 		17.4
(-1.9)
A 		41.9
(3)
A 		11.6
(-3)
A 		22.1
(-0.9)
A 		30
C 45.3
(1.2)
A 		56.5
(2.4)
A 		62
(3)
A 		6
(-3)
A 		55.6
(2.3)
A 		46.5
(1.3)
A 		56
avr 41.7
(1.4) 		36.9
(-0.3) 		46.3
(3) 		29
(-3) 		35.7
(-0.7) 		30
(-2.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.6
(-2)
A 		10.8
(-3)
A 		15.4
(3)
A 		11.5
(-2.1)
A 		5
B 18
(3)
A 		15.3
(0.9)
A 		10.1
(-3)
A 		10.5
(-2.7)
A 		8
C 17.8
(-0.2)
A 		25.3
(3)
A 		11.2
(-3)
A 		13.7
(-1.9)
A 		14
avr 15.8
(1.5) 		17.1
(3) 		12.2
(-2.7) 		11.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.1
(-0.8)
A 		5.2
(-3)
A 		13
(3)
A 		9.9
(0.6)
A 		12.1
(2.3)
A 		5.2
(-3)
A 		8
B 12.6
(2.6)
A 		13.2
(3)
A 		4.2
(-3)
A 		11.1
(1.6)
A 		4.7
(-2.7)
A 		8.2
(-0.3)
A 		9
C 16.8
(2.6)
A 		17.2
(2.7)
A 		15.8
(2.2)
A 		1.2
(-3)
A 		18
(3)
A 		15.6
(2.1)
A 		17
avr 12.5
(3) 		11.9
(2.3) 		11
(1.2) 		7.4
(-3) 		11.6
(1.9) 		9.7
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180822_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8449
Sequence Type Exemplar sequence
Representative Public ID Y40H7A.6 NCBI
Target Description Y40H7A.6 /REP_DB=WormBase Gene ID /WP=CE21817 /TR=Q9XW96 /GB=CAA22070.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070432(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070432 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-30) (sra-30) mRNA, complete cds. 9/11 None
Y40H7A.6 ENSEMBL cdna:known chromosome:CEL140:IV:15192261:15202985:-1 gene:Y40H7A.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019404 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019416 6/11 Cross Hyb Matching Probes None
F19B2.10 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15192266-15202991(-) 65.99 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-30
Ensembl Y40H7A.6
Entrez Gene 189805 Entrez gene
SwissProt Q9XW96 EMBL-EBI
WormBase CE33479 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22070 Hypothetical protein Y40H7A.6 [Caenorhabditis elegans] ref|NP_502833.2| Serpentine Receptor, class A (alpha) family member (sra-30) [Caenorhabditis elegans] 0.0
blast AAA68409 Serpentine receptor, class a (alpha) protein 27 [Caenorhabditis elegans] ref|NP_495328.2| Serpentine Receptor, class A (alpha) family member (sra-27) [Caenorhabditis elegans] sp|Q19549|SRA27_CAEEL Serpentine receptor class alpha-27 (Protein sra-27) 3.0E-84
blast CAE68115 Hypothetical protein CBG13758 [Caenorhabditis briggsae] 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 6.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502833.2 6 31-53,63-85,158-180,200-222,251-273,288-307
Y40H7A.6 6 31-53,63-85,158-180,200-222,251-273,288-307
Sequence
Target Sequence 
>C. ELEGANS:180822_AT
ggaaattgccaacttctattgcagaagacgtgctcatcaaaactcagagctccaagttcc
atggtgaattccacaaggtagaaagatggatcgatagaaagatcaatgccaaaatggcta
tcaacgagtatcgagacgaaaagaaaggtcagaagaaaatttgtcacagcatatacgaca
cgaacaccagatactcatcatttgaaaatgtgctgactacaaaatcaattctcgtgattg
cagtcactcatctcatattttcttgcctttcttctgtcgcagttacaattgctcgtgcct
ttgaaattggattatcagagtacacttttcatacaatgacccaattcattgctggtccac
tctacggtaacctatcaataccggttctgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAATTGCCAACTTCTATTGCAGA 463 527 1121 Antisense
GCTCCAAGTTCCATGGTGAATTCCA 366 297 1169 Antisense
GACACGAACACCAGATACTCATCAT 185 367 1297 Antisense
CTCGTGATTGCAGTCACTCATCTCA 226 233 1351 Antisense
ACTCATCTCATATTTTCTTGCCTTT 280 101 1366 Antisense
GCCTTTCTTCTGTCGCAGTTACAAT 484 281 1385 Antisense
CAGTTACAATTGCTCGTGCCTTTGA 222 207 1400 Antisense
GTACACTTTTCATACAATGACCCAA 676 459 1440 Antisense
GACCCAATTCATTGCTGGTCCACTC 470 381 1458 Antisense
TGGTCCACTCTACGGTAACCTATCA 619 507 1473 Antisense
AACCTATCAATACCGGTTCTGATTT 600 147 1489 Antisense
Sequence Source Affymetrix Proprietary Database