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[180821_at]

Description B0035.1B /REP_DB=WormBase Gene ID /WP=CE05159 /TR=Q9U3S8 /GB=CAB63428.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 58      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 86      6grp_total > 49      4grp_total > 51      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 610
1 2 3 4 range
A 1432.8
(-0.3)
P 		1635
(3)
P 		1272.1
(-2.9)
P 		1268.2
(-3)
P 		367
B 1389.9
(1.3)
P 		1364.2
(1)
P 		1539.8
(3)
P 		1024.9
(-3)
P 		515
C 1390.3
(-1.6)
P 		1428
(-0.4)
P 		1349.4
(-3)
P 		1527.7
(3)
P 		178
avr 1404.3
(0.9) 		1475.7
(3) 		1387.1
(0.4) 		1273.6
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 887
1 2 3 4 5 6 range
A 1352.5
(3)
P 		904.8
(-0.9)
P 		666
(-3)
P 		820
(-1.7)
P 		955.1
(-0.5)
P 		1194.1
(1.6)
P 		687
B 1144.3
(1.1)
P 		841.1
(-0.9)
P 		533.1
(-3)
P 		866.6
(-0.7)
P 		821.3
(-1.1)
P 		1420
(3)
P 		887
C 1103.1
(1.1)
P 		947.5
(-0.7)
P 		881.7
(-1.4)
P 		735.2
(-3)
P 		1000.8
(-0.1)
P 		1280.1
(3)
P 		545
avr 1200
(2) 		897.8
(-1) 		693.6
(-3) 		807.3
(-1.9) 		925.7
(-0.7) 		1298.1
(3) 		605
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 521.7
(3)
P 		354.9
(0)
P 		332.5
(-0.4)
P 		185.6
(-3)
P 		336
B 443.2
(3)
P 		336.9
(0.2)
P 		356.8
(0.7)
P 		218.4
(-3)
P 		225
C 460.2
(2.7)
P 		410.5
(1.3)
P 		470.3
(3)
P 		257.6
(-3)
P 		213
avr 475
(3) 		367.4
(0.5) 		386.5
(0.9) 		220.5
(-3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 249.3
(0.5)
P 		321.8
(3)
P 		145
(-3)
P 		208
(-0.9)
P 		288.2
(1.9)
P 		290.7
(1.9)
P 		177
B 398.1
(1)
P 		280
(-0.7)
P 		129.5
(-3)
P 		229.5
(-1.5)
P 		333.7
(0.1)
P 		529.5
(3)
P 		400
C 408.9
(2.6)
P 		289.1
(0)
P 		224.4
(-1.4)
P 		147.9
(-3)
P 		323.9
(0.8)
P 		428.5
(3)
P 		281
avr 352.1
(1.5) 		297
(0.1) 		166.3
(-3) 		195.1
(-2.3) 		315.3
(0.6) 		416.2
(3) 		250
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180821_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8839
Sequence Type Exemplar sequence
Representative Public ID B0035.1B NCBI
Target Description B0035.1B /REP_DB=WormBase Gene ID /WP=CE05159 /TR=Q9U3S8 /GB=CAB63428.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069723 NCBI Caenorhabditis elegans B0035.1b (B0035.1) mRNA, complete cds. 11/11 A 
SNAP00000035830 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11310971:11312307:1 11/11 None
GENEFINDER00000035859 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11310971:11312307:1 10/11 None
B0035.1b ENSEMBL cdna:known chromosome:CEL140:IV:11310943:11312468:1 gene:B0035.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178042 2 1 NM_069723 180821_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11310976-11312313(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0035.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63428 Hypothetical protein B0035.1b [Caenorhabditis elegans] ref|NP_502124.1| B0035.1b [Caenorhabditis elegans] 4.0E-65
blast CAA97419 Hypothetical protein B0035.1a [Caenorhabditis elegans] ref|NP_502125.1| B0035.1a [Caenorhabditis elegans] 6.0E-61
blast CAA97419 Hypothetical protein B0035.1a [Caenorhabditis elegans] ref|NP_502125.1| B0035.1a [Caenorhabditis elegans] 7.0E-61
blast CAB63428 Hypothetical protein B0035.1b [Caenorhabditis elegans] ref|NP_502124.1| B0035.1b [Caenorhabditis elegans] 7.0E-61
blast CAE62050 Hypothetical protein CBG06068 [Caenorhabditis briggsae] 4.0E-59
Sequence
Target Sequence 
>C. ELEGANS:180821_AT
aatcgtcgagcctaacaacggtccaccaactacgtcttctggtgcagctgccgcttctgc
tgcggcagtagttgcatctaaacttggctcgaggacaagaatagtctatccagatgatca
ttcgctgtctctagaggagcgtcgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTCGAGCCTAACAACGGTCCA 354 169 852 Antisense
GTCCACCAACTACGTCTTCTGGTGC 80 477 872 Antisense
ACCAACTACGTCTTCTGGTGCAGCT 39 85 876 Antisense
AGCTGCCGCTTCTGCTGCGGCAGTA 320 81 897 Antisense
TCTGCTGCGGCAGTAGTTGCATCTA 269 609 907 Antisense
TTGCATCTAAACTTGGCTCGAGGAC 260 697 923 Antisense
GCTCGAGGACAAGAATAGTCTATCC 443 295 938 Antisense
TAGTCTATCCAGATGATCATTCGCT 506 653 953 Antisense
CCAGATGATCATTCGCTGTCTCTAG 521 269 961 Antisense
GATCATTCGCTGTCTCTAGAGGAGC 185 421 967 Antisense
GCTGTCTCTAGAGGAGCGTCGTGTA 329 295 975 Antisense
Sequence Source Affymetrix Proprietary Database