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[180820_at]

Description K05C4.10 /REP_DB=WormBase Gene ID /WP=CE19978 /TR=Q9XUU7 /GB=CAB04570.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 51      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 72.7
(-0.6)
A 		50.5
(-3)
A 		52.7
(-2.8)
A 		104.9
(3)
A 		54
B 47.9
(0.1)
A 		59
(1)
A 		85.9
(3)
A 		6
(-3)
A 		80
C 66.1
(-0.3)
A 		86.6
(3)
A 		49.6
(-3)
A 		55.4
(-2.1)
A 		37
avr 62.2
(1.1) 		65.4
(3) 		62.7
(1.4) 		55.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 110
(3)
A 		55.7
(-2.2)
A 		91.8
(1.3)
A 		82.4
(0.4)
A 		47.2
(-3)
A 		64.5
(-1.3)
A 		63
B 100.5
(3)
A 		75.2
(1.1)
A 		83
(1.7)
A 		52.7
(-0.6)
A 		75.4
(1.1)
A 		21.4
(-3)
A 		79
C 59.5
(0.1)
A 		65.9
(0.6)
A 		70.9
(1)
A 		93.8
(3)
A 		59.5
(0.1)
A 		23.5
(-3)
A 		70
avr 90
(3) 		65.6
(0.3) 		81.9
(2.1) 		76.3
(1.5) 		60.7
(-0.3) 		36.5
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.5
(3)
A 		11
(-3)
A 		13.8
(-1.9)
A 		15.4
(-1.3)
A 		16
B 15.3
(1.5)
A 		14.6
(1.3)
A 		19.9
(3)
A 		1.3
(-3)
A 		19
C 21.9
(1.8)
A 		24.9
(3)
A 		17.3
(0.1)
A 		9.3
(-3)
A 		16
avr 21.2
(3) 		16.8
(0.9) 		17
(1) 		8.7
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 20.3
(2.5)
A 		19.8
(2)
A 		20
(2.2)
A 		20.9
(3)
A 		14.2
(-3)
A 		15.7
(-1.7)
A 		7
B 35
(3)
A 		25
(0.8)
A 		20.1
(-0.3)
A 		14
(-1.7)
A 		30.6
(2)
A 		8
(-3)
A 		27
C 22
(3)
A 		20.1
(2.2)
A 		18
(1.3)
A 		18.9
(1.7)
A 		19.3
(1.9)
A 		7.9
(-3)
A 		14
avr 25.8
(3) 		21.6
(1.4) 		19.4
(0.5) 		17.9
(-0.1) 		21.4
(1.3) 		10.5
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180820_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2202
Sequence Type Exemplar sequence
Representative Public ID K05C4.10 NCBI
Target Description K05C4.10 /REP_DB=WormBase Gene ID /WP=CE19978 /TR=Q9XUU7 /GB=CAB04570.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061160 NCBI Caenorhabditis elegans K05C4.10 (K05C4.10) mRNA, complete cds. 11/11 None
K05C4.10 ENSEMBL cdna:known chromosome:CEL140:I:14733414:14734249:1 gene:K05C4.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14733344-14734180(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05C4.10
Entrez Gene 187022 Entrez gene
SwissProt Q9XUU7 EMBL-EBI
WormBase CE19978 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04570 Hypothetical protein K05C4.10 [Caenorhabditis elegans] ref|NP_493561.1| K05C4.10 [Caenorhabditis elegans] 1.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493561.1 1 9-26
K05C4.10 1 9-26
Sequence
Target Sequence 
>C. ELEGANS:180820_AT
aaatcgatgtatcttcttctcctttttctactacatcttctttgtccacttatccatttt
tggagggaccttcagaaggaaaagagtgtgctcttcttcagctgctccatctgaatacac
tcgcccgaaaattgagagaggaaaaggacgagaagatggaattgcttcttcgccttcatt
ttggtgggtgctcttcattttaacggaaaacgaagagagagagagcagaatggggcaggg
aaatttggcagaaaaatacattagtctacgagaaaatgaacgtcttctttttttggattt
ggaaaaaaaaacattcggtgaaaaaataaagctttccatagaaagtagtatcctttgcag
ctccgagcatgtgctccaattgctcctaattggtagtctcatcttcttcagtcggtcctc
cgtccacttattcactttaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGATGTATCTTCTTCTCCTTT 331 119 30 Antisense
TTTCTACTACATCTTCTTTGTCCAC 490 671 54 Antisense
TTCTTTGTCCACTTATCCATTTTTG 288 691 67 Antisense
AAAGAGTGTGCTCTTCTTCAGCTGC 429 123 110 Antisense
CAGCTGCTCCATCTGAATACACTCG 694 203 128 Antisense
CTTCTTCGCCTTCATTTTGGTGGGT 131 221 194 Antisense
TTGGTGGGTGCTCTTCATTTTAACG 137 705 210 Antisense
GAAAGTAGTATCCTTTGCAGCTCCG 198 361 370 Antisense
TTGCAGCTCCGAGCATGTGCTCCAA 154 699 384 Antisense
AATTGGTAGTCTCATCTTCTTCAGT 514 179 417 Antisense
CTCCGTCCACTTATTCACTTTAAGA 391 227 447 Antisense
Sequence Source Affymetrix Proprietary Database