[Home] | [Total List]

[180819_at]

Description C35E7.7 /REP_DB=WormBase Gene ID /WP=CE17520 /TR=O61769 /GB=AAC17523.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 8.5
(-3)
A 		30
(1.1)
A 		33.2
(1.7)
A 		40.1
(3)
A 		32
B 11.6
(-2.2)
A 		48.8
(3)
A 		6.2
(-3)
A 		5.9
(-3)
A 		43
C 10.6
(-3)
A 		46.7
(3)
A 		12.7
(-2.7)
A 		42.6
(2.3)
A 		36
avr 10.2
(-3) 		41.8
(3) 		17.4
(-1.6) 		29.5
(0.7) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 44.1
(3)
A 		19.3
(-3)
A 		39.1
(1.8)
A 		39.7
(1.9)
A 		26.6
(-1.2)
A 		36.7
(1.2)
A 		25
B 6.7
(-2.6)
A 		12
(-1.8)
A 		4.4
(-3)
A 		43.3
(3)
A 		10.9
(-2)
A 		21.2
(-0.4)
A 		39
C 22.9
(-1.1)
A 		70.9
(3)
A 		11.1
(-2.2)
A 		3.5
(-2.8)
A 		2.3
(-2.9)
A 		1.5
(-3)
A 		69
avr 24.6
(0.3) 		34.1
(3) 		18.2
(-1.6) 		28.8
(1.5) 		13.3
(-3) 		19.8
(-1.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.1
(-3)
A 		6.5
(0.6)
A 		8.7
(3)
A 		5.9
(0)
A 		6
B 3.7
(-1.6)
A 		12
(3)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		11
C 3.5
(-3)
A 		13.4
(3)
A 		4.4
(-2.5)
A 		7.2
(-0.8)
A 		10
avr 3.4
(-3) 		10.6
(3) 		4.8
(-1.8) 		4.8
(-1.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.1
(-0.8)
A 		6.9
(-3)
A 		8.5
(0)
A 		10.1
(3)
A 		8
(-0.9)
A 		8.9
(0.8)
A 		3
B 2.3
(-2.3)
A 		4
(-1.3)
A 		1.1
(-3)
A 		11.5
(3)
A 		4.4
(-1.1)
A 		7.9
(0.9)
A 		10
C 8.5
(-0.7)
A 		21.6
(3)
A 		2.8
(-2.3)
A 		0.7
(-2.9)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		21
avr 6.3
(-1) 		10.8
(3) 		4.1
(-3) 		7.4
(-0) 		4.4
(-2.7) 		5.8
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180819_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1659
Sequence Type Exemplar sequence
Representative Public ID C35E7.7 NCBI
Target Description C35E7.7 /REP_DB=WormBase Gene ID /WP=CE17520 /TR=O61769 /GB=AAC17523.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060427 NCBI Caenorhabditis elegans C35E7.7 (C35E7.7) mRNA, complete cds. 11/11 None
C35E7.7 ENSEMBL cdna:known chromosome:CEL140:I:10821609:10823008:1 gene:C35E7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013371 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013389 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10821539-10822939(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35E7.7
Entrez Gene 183244 Entrez gene
SwissProt O61769 EMBL-EBI
WormBase CE17520 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17523 Hypothetical protein C35E7.7 [Caenorhabditis elegans] ref|NP_492828.1| C35E7.7 [Caenorhabditis elegans] 1.0E-98
blast CAE63904 Hypothetical protein CBG08475 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:180819_AT
agcatctttgttcattgttcacgactaatcttggtttccgttagttttattgaacgaatg
cgcactttccagttcttacaagccgaaatgttctataatttcatcattttactttcattc
tggtatgataatgttcaattttatgtttaccagctacttctcaaatgcgggtgcatcaga
caaccaacatttgaattcaattggcttcaaaccgaatatccagaaatagccaaacaatac
accgaagaccaattccttgccccagtagtcacttatccagaatgcaaatccatcgttacc
acttgtccaaatggttattcggttgccggtttcattgttgaaaccaaaaaaatattggtg
aactcaaatatttacccaaatccaaatactgtcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATCTTTGTTCATTGTTCACGAC 133 79 34 Antisense
TGTTCACGACTAATCTTGGTTTCCG 210 561 49 Antisense
TTGAACGAATGCGCACTTTCCAGTT 248 703 83 Antisense
CACTTTCCAGTTCTTACAAGCCGAA 165 195 96 Antisense
CCAGCTACTTCTCAAATGCGGGTGC 258 271 183 Antisense
ATGCGGGTGCATCAGACAACCAACA 698 41 198 Antisense
ATACACCGAAGACCAATTCCTTGCC 264 25 270 Antisense
CCAGTAGTCACTTATCCAGAATGCA 623 271 295 Antisense
TGCAAATCCATCGTTACCACTTGTC 497 577 316 Antisense
TTCGGTTGCCGGTTTCATTGTTGAA 465 693 351 Antisense
TTACCCAAATCCAAATACTGTCCTT 384 683 405 Antisense
Sequence Source Affymetrix Proprietary Database