[Home] | [Total List]

[180818_at]

Description T24H10.7 /REP_DB=WormBase Gene ID /WP=CE24014 /TR=Q9NAN3 /GB=CAB76416.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 20      6grp_total > 27      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 714
1 2 3 4 range
A 1171.5
(1.1)
P 		804.6
(-2.1)
P 		702
(-3)
P 		1382.3
(3)
P 		680
B 1415.5
(3)
P 		866.7
(-2.3)
P 		794.5
(-3)
P 		1159.6
(0.5)
P 		621
C 1222.2
(3)
P 		963.3
(-0.3)
P 		749.2
(-3)
P 		1078.5
(1.2)
P 		473
avr 1269.7
(3) 		878.2
(-1.5) 		748.6
(-3) 		1206.8
(2.3) 		521

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 844
1 2 3 4 5 6 range
A 1481.1
(3)
P 		946.2
(-1)
P 		671
(-3)
P 		679.4
(-2.9)
P 		775.5
(-2.2)
P 		950.9
(-0.9)
P 		810
B 1349.6
(3)
P 		967.9
(-0.5)
P 		893.3
(-1.2)
P 		809.6
(-1.9)
P 		692.7
(-3)
P 		897.1
(-1.1)
P 		657
C 1515.1
(3)
P 		1110
(-0.1)
P 		842.9
(-2.2)
P 		738.5
(-3)
P 		764
(-2.8)
P 		909
(-1.7)
P 		777
avr 1448.6
(3) 		1008
(-0.7) 		802.4
(-2.5) 		742.5
(-3) 		744.1
(-3) 		919
(-1.5) 		706
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 426.5
(3)
P 		174.7
(-3)
P 		183.5
(-2.8)
P 		202.3
(-2.3)
P 		252
B 451.4
(3)
P 		214
(-2.3)
P 		184.1
(-3)
P 		247.1
(-1.6)
P 		267
C 404.6
(3)
P 		276.9
(-0.4)
P 		261.1
(-0.9)
P 		181.8
(-3)
P 		223
avr 427.5
(3) 		221.9
(-2.7) 		209.6
(-3) 		210.4
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 273
(1)
P 		336.5
(3)
P 		146.1
(-3)
P 		172.3
(-2.2)
P 		234
(-0.2)
P 		231.5
(-0.3)
P 		190
B 469.6
(3)
P 		322.2
(-0.5)
P 		216.9
(-2.9)
P 		214.4
(-3)
P 		281.4
(-1.4)
P 		334.5
(-0.2)
P 		255
C 561.6
(3)
P 		338.7
(-0.2)
P 		214.5
(-2)
P 		148.5
(-3)
P 		247.2
(-1.6)
P 		304.3
(-0.7)
P 		413
avr 434.7
(3) 		332.5
(0.6) 		192.5
(-2.7) 		178.4
(-3) 		254.2
(-1.2) 		290.1
(-0.4) 		256
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2634
Sequence Type Exemplar sequence
Representative Public ID T24H10.7 NCBI
Target Description T24H10.7 /REP_DB=WormBase Gene ID /WP=CE24014 /TR=Q9NAN3 /GB=CAB76416.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027195(11), NM_001027196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027195 NCBI Caenorhabditis elegans T24H10.7a (T24H10.7) mRNA, complete cds. 11/11 None
NM_001027196 NCBI Caenorhabditis elegans T24H10.7b (T24H10.7) mRNA, complete cds. 11/11 None
GENEFINDER00000021900 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9113200:9123646:1 11/11 None
T24H10.7a ENSEMBL cdna:known chromosome:CEL140:II:9113128:9132108:1 gene:T24H10.7 11/11 None
T24H10.7b ENSEMBL cdna:known chromosome:CEL140:II:9116535:9131774:1 gene:T24H10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021893 5/11 Cross Hyb Matching Probes None
SNAP00000021894 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174452 3 2 NM_001027195 180818_at (11)
NM_001027196 180818_at (11)
NM_001027197 188946_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9113196-9123246(+) 100.0 100.0
Public Domain and Genome References
Ensembl T24H10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76416 Hypothetical protein T24H10.7a [Caenorhabditis elegans] ref|NP_001022366.1| T24H10.7a [Caenorhabditis elegans] 1.0E-133
blast CAI46586 Hypothetical protein T24H10.7b [Caenorhabditis elegans] ref|NP_001022367.1| T24H10.7b [Caenorhabditis elegans] 1.0E-133
blast CAI46586 Hypothetical protein T24H10.7b [Caenorhabditis elegans] ref|NP_001022367.1| T24H10.7b [Caenorhabditis elegans] 1.0E-122
blast CAB76416 Hypothetical protein T24H10.7a [Caenorhabditis elegans] ref|NP_001022366.1| T24H10.7a [Caenorhabditis elegans] 1.0E-122
blast CAB76416 Hypothetical protein T24H10.7a [Caenorhabditis elegans] ref|NP_001022366.1| T24H10.7a [Caenorhabditis elegans] 4.0E-83
blast CAI46586 Hypothetical protein T24H10.7b [Caenorhabditis elegans] ref|NP_001022367.1| T24H10.7b [Caenorhabditis elegans] 8.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 4.1E-7
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 4.1E-7
Sequence
Target Sequence 
>C. ELEGANS:180818_AT
gatgcccttcgtgttatgcaaaccaccaataaatatgaattcactggaggagctgtttca
tctccagttctccccgttttacagacagcagcattcagtccaatcacaccggcatctgca
agcgacatgcacacaattgtaatgtctttattgggtaatactccaataacaagcggccca
tcaattgctccactgtcatcaccaactttattgccactggtcacctcaggagatctggac
gatctatcgatgaagattctggcctcgtctgccattcccggtccaccaataatttcgtcg
tccaattcgccagactcttccacaactgcggttaccacttctcaaattacggcttttcaa
ccgcttctaaacaatttcgtttcgtcaacaaccgcctccacttcacgtcctgataaactc
aatttaactccaccacaacaatccgcagaaatttacgctttcaacggtgtcaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCCCTTCGTGTTATGCAAACCA 367 415 196 Antisense
TCTCCCCGTTTTACAGACAGCAGCA 64 611 264 Antisense
GACAGCAGCATTCAGTCCAATCACA 231 369 279 Antisense
TAACAAGCGGCCCATCAATTGCTCC 624 639 362 Antisense
GTCATCACCAACTTTATTGCCACTG 4 469 390 Antisense
CCACTGGTCACCTCAGGAGATCTGG 427 275 409 Antisense
TCGATGAAGATTCTGGCCTCGTCTG 529 603 442 Antisense
CATTCCCGGTCCACCAATAATTTCG 611 211 468 Antisense
AACTGCGGTTACCACTTCTCAAATT 529 141 519 Antisense
TCCACTTCACGTCCTGATAAACTCA 531 587 592 Antisense
TTTACGCTTTCAACGGTGTCAACAG 659 667 647 Antisense
Sequence Source Affymetrix Proprietary Database