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[180817_at]

Description W05E10.2 /REP_DB=WormBase Gene ID /WP=CE06549 /TR=Q23174 /GB=CAB01248.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 27.9
(-1.4)
A 		2
(-3)
A 		2.8
(-3)
A 		100.5
(3)
P 		99
B 35.4
(0.1)
A 		16
(-1.7)
A 		1.8
(-3)
A 		67.5
(3)
M 		66
C 33.2
(0.5)
A 		11.7
(-2.5)
A 		7.8
(-3)
A 		51.5
(3)
M 		44
avr 32.2
(-0.6) 		9.9
(-2.5) 		4.1
(-3) 		73.2
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 51.9
(3)
A 		23.2
(-1.4)
A 		12.9
(-3)
A 		18.2
(-2.2)
A 		15.8
(-2.6)
A 		32.8
(0.1)
A 		39
B 15.4
(-1.3)
A 		44
(2.4)
P 		48.2
(3)
P 		2.8
(-3)
A 		17.1
(-1.1)
A 		5.3
(-2.7)
A 		45
C 34.8
(3)
A 		4.7
(-3)
A 		28.5
(1.7)
A 		24.9
(1)
A 		20.4
(0.1)
A 		22.7
(0.6)
A 		30
avr 34
(3) 		24
(-0.2) 		29.9
(1.7) 		15.3
(-3) 		17.8
(-2.2) 		20.3
(-1.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.1
(1.1)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		14.7
(3)
P 		14
B 11.3
(1.7)
A 		4
(-1.5)
A 		0.4
(-3)
A 		14.4
(3)
M 		14
C 11
(3)
A 		3.4
(-2.5)
A 		2.7
(-3)
A 		8.7
(1.3)
M 		8
avr 10.8
(2) 		2.6
(-2.3) 		1.3
(-3) 		12.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.6
(3)
A 		8.3
(1.9)
A 		2.8
(-3)
A 		4.6
(-1.4)
A 		4.8
(-1.2)
A 		8
(1.6)
A 		7
B 5.3
(-1)
A 		14.6
(3)
P 		11.7
(1.7)
P 		0.8
(-3)
A 		7
(-0.3)
A 		2
(-2.5)
A 		14
C 12.9
(3)
A 		1.4
(-3)
A 		7.3
(0.1)
A 		5
(-1.1)
A 		6.6
(-0.3)
A 		7.6
(0.2)
A 		12
avr 9.3
(3) 		8.1
(1.8) 		7.3
(0.9) 		3.5
(-3) 		6.1
(-0.3) 		5.9
(-0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13305
Sequence Type Exemplar sequence
Representative Public ID W05E10.2 NCBI
Target Description W05E10.2 /REP_DB=WormBase Gene ID /WP=CE06549 /TR=Q23174 /GB=CAB01248.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073555 NCBI Caenorhabditis elegans W05E10.2 (W05E10.2) mRNA, complete cds. 11/11 None
W05E10.2 ENSEMBL cdna:known chromosome:CEL140:V:11691005:11691765:1 gene:W05E10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019392 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11691004-11691765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05E10.2
Entrez Gene 189214 Entrez gene
SwissProt Q23174 EMBL-EBI
WormBase CE06549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01248 Hypothetical protein W05E10.2 [Caenorhabditis elegans] ref|NP_505956.1| W05E10.2 [Caenorhabditis elegans] 3.0E-60
blast CAE75315 Hypothetical protein CBG23286 [Caenorhabditis briggsae] 2.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505956.1 1 26-48
W05E10.2 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:180817_AT
attagattggattctggcagggataatatgcattgtctgtattgcattcttggtaattgc
agtgaaaatttgctacaattattcaaagaaatttccggaatcttcagaaaaggaaccact
aaaccaggacccacccgtccaactcggtataattcctcaacttcagaatcaagttaatga
aacgagcacgagagcattgaaaatttcaatagacgagcgatatccacaaaaggaacacgg
ggccacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAGATTGGATTCTGGCAGGGATA 399 11 81 Antisense
GGCAGGGATAATATGCATTGTCTGT 254 537 96 Antisense
CATTGTCTGTATTGCATTCTTGGTA 585 215 111 Antisense
GCATTCTTGGTAATTGCAGTGAAAA 292 307 124 Antisense
GAAATTTCCGGAATCTTCAGAAAAG 401 363 168 Antisense
TCAGAAAAGGAACCACTAAACCAGG 140 623 184 Antisense
CGTCCAACTCGGTATAATTCCTCAA 264 245 216 Antisense
CTCGGTATAATTCCTCAACTTCAGA 111 213 223 Antisense
AAACGAGCACGAGAGCATTGAAAAT 641 125 260 Antisense
TTCAATAGACGAGCGATATCCACAA 46 685 285 Antisense
TCCACAAAAGGAACACGGGGCCACG 403 519 303 Antisense
Sequence Source Affymetrix Proprietary Database