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[180816_at]

Description Y2C2A.1 /REP_DB=WormBase Gene ID /WP=CE25234 /TR=Q9N541 /GB=AAF60483.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      6grp_cgc > 54      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 9.3
(-2.3)
A 		2.5
(-3)
A 		2.3
(-3)
A 		59.6
(3)
A 		57
B 3
(-3)
A 		9.2
(1.7)
A 		3.2
(-2.9)
A 		11
(3)
A 		8
C 7
(-2.7)
A 		5.7
(-2.8)
A 		3
(-3)
A 		93.8
(3)
A 		91
avr 6.4
(-2.6) 		5.8
(-2.7) 		2.8
(-3) 		54.8
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.1
(2.8)
A 		6.1
(1.3)
A 		5
(-0.4)
A 		3.3
(-3)
A 		4.5
(-1.2)
A 		7.2
(3)
A 		4
B 4.5
(-0.7)
A 		6.1
(3)
A 		5.9
(2.5)
A 		3.5
(-3)
A 		4.9
(0.2)
A 		5.4
(1.4)
A 		3
C 2.1
(-2.9)
A 		12.1
(3)
A 		3.4
(-2.2)
A 		7.2
(0.1)
A 		2
(-3)
A 		4.9
(-1.3)
A 		10
avr 4.6
(-1.9) 		8.1
(3) 		4.8
(-1.6) 		4.7
(-1.7) 		3.8
(-3) 		5.8
(-0.2) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.4
(-0.9)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		8.7
(3)
A 		8
B 1
(-2.2)
A 		2.3
(3)
A 		0.8
(-3)
A 		2.3
(3)
A 		2
C 2.3
(-2.5)
A 		1.6
(-2.8)
A 		1.1
(-3)
A 		15.8
(3)
A 		15
avr 2.2
(-2) 		1.5
(-2.5) 		0.8
(-3) 		8.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.3
(-0.9)
A 		2.2
(3)
A 		1.1
(-1.7)
A 		0.8
(-3)
A 		1.4
(-0.4)
A 		1.7
(0.9)
A 		1
B 1.6
(0.8)
A 		2
(3)
A 		1.4
(-0.3)
A 		0.9
(-3)
A 		2
(3)
A 		2
(3)
A 		1
C 0.8
(-2.8)
A 		3.7
(3)
A 		0.9
(-2.6)
A 		1.5
(-1.4)
A 		0.7
(-3)
A 		1.6
(-1.2)
A 		3
avr 1.2
(-2.6) 		2.6
(3) 		1.1
(-3) 		1.1
(-3) 		1.4
(-1.8) 		1.8
(-0.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10031
Sequence Type Exemplar sequence
Representative Public ID Y2C2A.1 NCBI
Target Description Y2C2A.1 /REP_DB=WormBase Gene ID /WP=CE25234 /TR=Q9N541 /GB=AAF60483.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068834 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-80) (tag-80) mRNA, complete cds. 11/11 None
Y2C2A.1 ENSEMBL cdna:known chromosome:CEL140:IV:7590545:7605882:1 gene:Y2C2A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7590550-7605888(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-80
Ensembl Y2C2A.1
Entrez Gene 189351 Entrez gene
SwissProt Q9N541 EMBL-EBI
WormBase CE25234 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60483 Temporarily assigned gene name protein 80 [Caenorhabditis elegans] ref|NP_501235.1| Temporarily Assigned Gene name family member (tag-80) [Caenorhabditis elegans] 0.0
blast CAE57131 Hypothetical protein CBG25053 [Caenorhabditis briggsae] 0.0
blast CAE57152 Hypothetical protein CBG25086 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180816_AT
gctggtcttcatatttctccaattcgtagaacaatgagtgcagcttgcacagcagaaaaa
catattgatgatgaagaaaatataaaagaaagagaagttaagcatgcacagagccatgat
caaattaagaaaagagcgggtggcgagccaaatgcttatgaactcctcgagcagcacagc
ttccgtcatacacaaccccttctctgtaatgtcgatttcctttggcgcctcaatttcgca
gcaaacagaatgaccgaggagattgccgatgaggctggcagagaattgcgtgcacactac
cggaatgtggctaacccacgagccagatatttctccgacgcttatgatattggtacggac
gacgaagaggaagaggtcactgaaacgtatgtttttatttttttattccaatcctgtgac
ttatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGTCTTCATATTTCTCCAATTC 207 295 14242 Antisense
GCCAAATGCTTATGAACTCCTCGAG 193 279 14388 Antisense
AACCCCTTCTCTGTAATGTCGATTT 62 147 14435 Antisense
CTGTAATGTCGATTTCCTTTGGCGC 361 239 14445 Antisense
CTTTGGCGCCTCAATTTCGCAGCAA 595 223 14461 Antisense
GAATGACCGAGGAGATTGCCGATGA 709 329 14489 Antisense
AGAGAATTGCGTGCACACTACCGGA 644 67 14521 Antisense
CACTACCGGAATGTGGCTAACCCAC 37 183 14536 Antisense
AACCCACGAGCCAGATATTTCTCCG 95 147 14554 Antisense
TATTTCTCCGACGCTTATGATATTG 185 661 14569 Antisense
TTATTCCAATCCTGTGACTTATCAT 43 679 14644 Antisense
Sequence Source Affymetrix Proprietary Database