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[180815_at]

Description K01H12.1 /REP_DB=WormBase Gene ID /WP=CE03453 /TR=Q21102 /GB=CAA92471.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 65      6grp_total > 73      4grp_total > 02      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8249
1 2 3 4 range
A 760.8
(-2.9)
P 		660
(-3)
P 		669.4
(-3)
P 		8793.4
(3)
P 		8133
B 702.1
(-2.9)
P 		544.9
(-3)
P 		615.4
(-2.9)
P 		8096.9
(3)
P 		7552
C 858.9
(-2.8)
P 		666.6
(-3)
P 		745.1
(-2.9)
P 		8189.7
(3)
P 		7523
avr 773.9
(-2.9) 		623.8
(-3) 		676.6
(-3) 		8360
(3) 		7736

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 897
1 2 3 4 5 6 range
A 1038.5
(-2)
P 		886.6
(-3)
P 		1783.4
(3)
P 		1454.1
(0.8)
P 		1137.2
(-1.3)
P 		978.9
(-2.4)
P 		897
B 1171.6
(-3)
P 		1408.4
(2.1)
P 		1297.4
(-0.3)
P 		1326
(0.3)
P 		1449.9
(3)
P 		1424.6
(2.5)
P 		278
C 1032.1
(-2)
P 		1444.5
(3)
P 		945.4
(-3)
P 		1214.3
(0.2)
P 		1131.4
(-0.8)
P 		1429.2
(2.8)
P 		499
avr 1080.7
(-3) 		1246.5
(0.8) 		1342.1
(3) 		1331.5
(2.8) 		1239.5
(0.6) 		1277.6
(1.5) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1591
1 2 3 4 range
A 277
(-2.3)
P 		143.3
(-3)
P 		175
(-2.8)
P 		1287.2
(3)
P 		1144
B 223.9
(-2.7)
P 		134.6
(-3)
P 		142.6
(-3)
P 		1725.5
(3)
P 		1591
C 284.3
(-2.5)
P 		191.7
(-3)
P 		259.7
(-2.7)
P 		1380.9
(3)
P 		1189
avr 261.7
(-2.5) 		156.5
(-3) 		192.4
(-2.8) 		1464.5
(3) 		1308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 191.4
(-3)
P 		315.3
(0.8)
P 		388.4
(3)
P 		368.8
(2.4)
P 		343.2
(1.6)
P 		238.3
(-1.6)
P 		197
B 407.7
(-1)
P 		468.8
(0.4)
P 		315
(-3)
P 		351.2
(-2.2)
P 		589.1
(3)
P 		531.2
(1.7)
P 		274
C 382.6
(0.6)
P 		440.8
(2.1)
P 		240.6
(-3)
P 		244.2
(-2.9)
P 		366.1
(0.2)
P 		478.4
(3)
P 		238
avr 327.2
(-2.4) 		408.3
(1.8) 		314.7
(-3) 		321.4
(-2.7) 		432.8
(3) 		416
(2.1) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180815_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8811
Sequence Type Exemplar sequence
Representative Public ID K01H12.1 NCBI
Target Description K01H12.1 /REP_DB=WormBase Gene ID /WP=CE03453 /TR=Q21102 /GB=CAA92471.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069325 NCBI Caenorhabditis elegans K01H12.1 (K01H12.1) mRNA, complete cds. 11/11 None
SNAP00000037359 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9707136:9707637:1 11/11 None
GENEFINDER00000037366 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9707136:9707637:1 11/11 None
K01H12.1 ENSEMBL cdna:known chromosome:CEL140:IV:9707136:9707637:1 gene:K01H12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9707141-9707643(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01H12.1
Entrez Gene 186854 Entrez gene
SwissProt Q21102 EMBL-EBI
WormBase CE03453 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604183_AT similar to zinc finger, CSL domain containing 2 cfa
CANINE:1588704_S_AT similar to zinc finger, CSL domain containing 2 cfa
CANINE:1588703_AT similar to zinc finger, CSL domain containing 2 cfa
CANINE:1588702_AT similar to zinc finger, CSL domain containing 2 cfa
CANINE_2:CFA.10679.1.S1_A_AT similar to zinc finger, CSL domain containing 2 cfa
CANINE_2:CFA.19718.1.S1_AT similar to zinc finger, CSL domain containing 2 cfa
CANINE_2:CFAAFFX.9774.1.S1_S_AT similar to zinc finger, CSL domain containing 2 cfa
DROSOPHILA_2:1627723_AT dm
DROSGENOME1:149679_AT dm
CHICKEN:GGA.15396.1.S1_AT similar to RIKEN cDNA 2610018L09 gga
CHICKEN:GGA.15467.1.S1_AT similar to RIKEN cDNA 2610018L09 gga
CHICKEN:GGA.15467.1.S1_S_AT similar to RIKEN cDNA 2610018L09 gga
HG-U95C:65776_AT zinc finger, CSL-type containing 2 hs
HU35KSUBA:RC_AA460720_AT zinc finger, CSL-type containing 2 hs
HU35KSUBD:RC_Z39783_S_AT zinc finger, CSL-type containing 2 hs
HU35KSUBD:RC_H92173_AT zinc finger, CSL-type containing 2 hs
U133_X3P:HS.264915.0.S2_3P_AT zinc finger, CSL-type containing 2 hs
U133_X3P:HS.264915.0.S1_3P_AT zinc finger, CSL-type containing 2 hs
HG-U133_PLUS_2:225195_AT zinc finger, CSL-type containing 2 hs
HG-U133B:225195_AT zinc finger, CSL-type containing 2 hs
HG-U133_PLUS_2:225200_AT zinc finger, CSL-type containing 2 hs
HG-U133B:225200_AT zinc finger, CSL-type containing 2 hs
HG-U95B:45320_AT zinc finger, CSL-type containing 2 hs
HG-U95B:44370_AT Zinc finger, CSL-type containing 2 hs
HG-U95D:85519_AT Zinc finger, CSL-type containing 2 hs
HU35KSUBB:RC_H23173_AT Zinc finger, CSL-type containing 2 hs
MG-U74CV2:165989_F_AT zinc finger, CSL domain containing 2 mm
MG-U74CV2:170947_AT zinc finger, CSL domain containing 2 mm
MOE430B:1431200_A_AT zinc finger, CSL domain containing 2 mm
MOUSE430_2:1431200_A_AT zinc finger, CSL domain containing 2 mm
MOE430B:1455268_AT zinc finger, CSL domain containing 2 mm
MOUSE430_2:1455268_AT zinc finger, CSL domain containing 2 mm
MOE430B:1433921_S_AT zinc finger, CSL domain containing 2 mm
MOUSE430_2:1433921_S_AT zinc finger, CSL domain containing 2 mm
MU19KSUBA:TC15296_S_AT Zinc finger, CSL domain containing 2, mRNA (cDNA clone MGC:36233 IMAGE:4920779) mm
MU19KSUBB:TC34096_AT Zinc finger, CSL domain containing 2, mRNA (cDNA clone MGC:36233 IMAGE:4920779) mm
MU19KSUBC:TC41237_AT Zinc finger, CSL domain containing 2, mRNA (cDNA clone MGC:36233 IMAGE:4920779) mm
Protein Similarities
Method ID Description E-Value
blast CAA92471 Hypothetical protein K01H12.1 [Caenorhabditis elegans] ref|NP_501726.1| K01H12.1 [Caenorhabditis elegans] sp|Q21102|YZ3I_CAEEL Hypothetical protein K01H12.1 in chromosome IV 3.0E-29
blast CAE74825 Hypothetical protein CBG22663 [Caenorhabditis briggsae] 2.0E-19
blast CAB52163 SPAC8F11.02c [Schizosaccharomyces pombe] ref|NP_593951.1| hypothetical protein SPAC8F11.02c [Schizosaccharomyces pombe 972h-] sp|Q9UT33|YKG2_SCHPO Hypothetical protein C8F11.02c 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR007872 EMBL-EBI CSL zinc finger 3.4E-34
Sequence
Target Sequence 
>C. ELEGANS:180815_AT
gtcagttttccacgacgaagtcgaaattgaggattttgagtttgacgaggagaaagacgt
gtaccactatccatgcccttgtggcgatcgatttgaaatccctagagaaatgcttgaaat
gggagaagatgtagcacaatgtcccagctgctcccttctcattcgtgttatctacgatcc
tgaagatttcgtcaaactggagaccatctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGTTTTCCACGACGAAGTCGAA 217 461 15 Antisense
ATTGAGGATTTTGAGTTTGACGAGG 418 3 40 Antisense
AAAGACGTGTACCACTATCCATGCC 61 123 67 Antisense
TATCCATGCCCTTGTGGCGATCGAT 258 657 82 Antisense
GTGGCGATCGATTTGAAATCCCTAG 175 491 95 Antisense
GAAATCCCTAGAGAAATGCTTGAAA 497 359 109 Antisense
ATGTAGCACAATGTCCCAGCTGCTC 291 47 143 Antisense
TCCCTTCTCATTCGTGTTATCTACG 114 599 166 Antisense
CATTCGTGTTATCTACGATCCTGAA 365 217 174 Antisense
CGATCCTGAAGATTTCGTCAAACTG 240 247 189 Antisense
TTTCGTCAAACTGGAGACCATCTCG 87 669 201 Antisense
Sequence Source Affymetrix Proprietary Database