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[180814_s_at]

Description F09B12.3 /REP_DB=WormBase Gene ID /WP=CE17645 /TR=O62146 /GB=CAB05478.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 13      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 14      6grp_total > 22      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11257
1 2 3 4 range
A 7027.6
(0.7)
P 		10374
(2.6)
P 		11166.7
(3)
P 		449.3
(-3)
P 		10717
B 6716
(0.4)
P 		10071.9
(2.2)
P 		11558
(3)
P 		340
(-3)
P 		11218
C 6588.2
(1)
P 		9541
(2.9)
P 		9774.6
(3)
P 		301
(-3)
P 		9474
avr 6777.3
(0.7) 		9995.6
(2.5) 		10833.1
(3) 		363.4
(-3) 		10470

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5794
1 2 3 4 5 6 range
A 4162
(0.5)
P 		6463.2
(3)
P 		3877.4
(0.2)
P 		3274.9
(-0.5)
P 		1219.5
(-2.7)
P 		976.1
(-3)
P 		5487
B 4694.2
(1.5)
P 		6023.9
(3)
P 		4311.9
(1.1)
P 		2891.5
(-0.5)
P 		1264.1
(-2.4)
P 		710.5
(-3)
P 		5313
C 4965.6
(2)
P 		5819.2
(3)
P 		5798.9
(3)
P 		2555.9
(-0.8)
P 		1693
(-1.8)
P 		669.5
(-3)
P 		5150
avr 4607.3
(1.3) 		6102.1
(3) 		4662.7
(1.4) 		2907.4
(-0.6) 		1392.2
(-2.3) 		785.4
(-3) 		5317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3356
1 2 3 4 range
A 2558.7
(2.2)
P 		2251.9
(1.6)
P 		2919.2
(3)
P 		65.8
(-3)
P 		2853
B 2141.7
(1.8)
P 		2487.5
(2.6)
P 		2678.2
(3)
P 		72.5
(-3)
P 		2606
C 2180.9
(0.8)
P 		2743.1
(1.8)
P 		3406.8
(3)
P 		50.8
(-3)
P 		3356
avr 2293.8
(1.6) 		2494.2
(2) 		3001.4
(3) 		63
(-3) 		2938

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2075
1 2 3 4 5 6 range
A 767.2
(-1.5)
P 		2298.6
(3)
P 		844.4
(-1.2)
P 		830.6
(-1.3)
P 		368
(-2.6)
P 		237.6
(-3)
P 		2061
B 1633.4
(1.7)
P 		2005.1
(3)
P 		1047.1
(-0.3)
P 		765.9
(-1.3)
P 		513.6
(-2.1)
P 		265
(-3)
P 		1740
C 1840.5
(3)
P 		1775.6
(2.8)
P 		1475.9
(1.6)
P 		514
(-1.9)
P 		547.8
(-1.8)
P 		224.1
(-3)
P 		1616
avr 1413.7
(0.9) 		2026.4
(3) 		1122.5
(-0) 		703.5
(-1.4) 		476.5
(-2.2) 		242.2
(-3) 		1784
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180814_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17890
Sequence Type Exemplar sequence
Representative Public ID F09B12.3 NCBI
Target Description F09B12.3 /REP_DB=WormBase Gene ID /WP=CE17645 /TR=O62146 /GB=CAB05478.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078108(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078108 NCBI Caenorhabditis elegans F09B12.3 (F09B12.3) mRNA, complete cds. 11/11 A 
SNAP00000031083 ENSEMBL cdna:SNAP chromosome:CEL140:X:15095349:15097774:-1 11/11 None
GENEFINDER00000031092 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15095349:15097870:-1 11/11 None
F09B12.3 ENSEMBL cdna:known chromosome:CEL140:X:15095251:15097870:-1 gene:F09B12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15095348-15097870(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09B12.3
Entrez Gene 181605 Entrez gene
SwissProt O62146 EMBL-EBI
WormBase CE31469 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05478 Hypothetical protein F09B12.3 [Caenorhabditis elegans] ref|NP_510509.2| F09B12.3 [Caenorhabditis elegans] 0.0
blast CAE63260 Hypothetical protein CBG07632 [Caenorhabditis briggsae] 0.0
blast AAK29943 Hypothetical protein Y54F10AM.8 [Caenorhabditis elegans] ref|NP_497570.1| Y54F10AM.8 [Caenorhabditis elegans] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR007000 EMBL-EBI Laminin A 1.0E-126
Pfam IPR007000 EMBL-EBI Laminin A 1.0E-126
Pfam IPR007000 EMBL-EBI Laminin A 1.0E-126
Pfam IPR007000 EMBL-EBI Laminin A 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510509.2 1 20-42
F09B12.3 1 20-42
GENEFINDER00000031092 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:180814_S_AT
gccaaatcagccacttccaaagaatggacttttctacgtcttggaacaaatgcctggaaa
gattgtttactccgatctgacctggttcgtcgagaagtactcgtatttcccgtcctacaa
cattccattcttcaaggagatcactgaaatttccggatttatcggacaagccgctaagat
gggagactggttcaaatggggagcatctcccagagcaaagatctttgaaagagatcatgg
caatgttcacgacttggattcgctcactgctctcatgagatacaacgactataagaatga
tgaattctccaagtgcaagtgcaacccaccatactctgctgaagctggcatttctgctcg
tggagatttgaatccagctaatggaacatacgagttcccaggacaaggacacgttaacca
cggagctcttgattacaagggtacaaatgttgagttgatgaagaagttgcaatttgtcgc
acaaggagggccaacatggggcaaggttccatctttcaagtggtctgagtttgactttaa
agacaaggtcaaccacgtcggacacccagacgaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAAATCAGCCACTTCCAAAGAAT 71 279 1170 Antisense
GAATGGACTTTTCTACGTCTTGGAA 126 333 1191 Antisense
TCCGATCTGACCTGGTTCGTCGAGA 424 595 1240 Antisense
GGAGCATCTCCCAGAGCAAAGATCT 123 521 1369 Antisense
TGTTCACGACTTGGATTCGCTCACT 338 561 1413 Antisense
TTCGCTCACTGCTCTCATGAGATAC 191 697 1428 Antisense
CAAGTGCAAGTGCAACCCACCATAC 421 183 1479 Antisense
CCACCATACTCTGCTGAAGCTGGCA 600 273 1495 Antisense
CTGGCATTTCTGCTCGTGGAGATTT 485 241 1514 Antisense
AAGACAAGGTCAACCACGTCGGACA 450 151 1709 Antisense
CCACGTCGGACACCCAGACGAATGG 328 275 1722 Antisense
Sequence Source Affymetrix Proprietary Database