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[180813_s_at]

Description C01B4.7 /REP_DB=WormBase Gene ID /WP=CE20476 /TR=Q9UAT5 /GB=AAD14699.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 545.4
(3)
P 		340.2
(-1.3)
M 		260.1
(-2.9)
A 		256.4
(-3)
A 		289
B 589
(3)
P 		275
(-2.2)
A 		233.7
(-2.9)
M 		228.9
(-3)
A 		360
C 489.3
(3)
P 		365.6
(0.7)
A 		173.4
(-2.9)
A 		170.3
(-3)
A 		319
avr 541.2
(3) 		326.9
(-1) 		222.4
(-2.9) 		218.5
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 610
1 2 3 4 5 6 range
A 650.4
(3)
P 		368.6
(-0.2)
P 		265.6
(-1.3)
A 		192.7
(-2.2)
A 		244.6
(-1.6)
A 		119.5
(-3)
A 		531
B 729.1
(3)
P 		425.6
(-0.3)
P 		277.1
(-1.9)
P 		299.9
(-1.6)
A 		219.3
(-2.5)
P 		174.6
(-3)
A 		555
C 640.4
(3)
P 		409.8
(0.2)
P 		289.3
(-1.3)
A 		307.2
(-1.1)
A 		246.7
(-1.8)
M 		151.6
(-3)
A 		489
avr 673.3
(3) 		401.3
(-0.1) 		277.3
(-1.5) 		266.6
(-1.7) 		236.9
(-2) 		148.6
(-3) 		525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 198.6
(3)
P 		73.9
(-1.6)
M 		68
(-1.9)
A 		37.5
(-3)
A 		161
B 187.8
(3)
P 		67.9
(-2.2)
A 		54.2
(-2.8)
M 		48.8
(-3)
A 		139
C 162
(3)
P 		105.1
(0.4)
A 		60.4
(-1.6)
A 		28.7
(-3)
A 		133
avr 182.8
(3) 		82.3
(-1.2) 		60.9
(-2.1) 		38.3
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 119.9
(2.3)
P 		131.1
(3)
P 		57.8
(-1.3)
A 		48.9
(-1.8)
A 		73.8
(-0.4)
A 		29.1
(-3)
A 		102
B 253.7
(3)
P 		141.7
(-0.6)
P 		67.3
(-2.9)
P 		79.4
(-2.5)
A 		89.1
(-2.2)
P 		65.1
(-3)
A 		189
C 237.4
(3)
P 		125
(-0.6)
P 		73.6
(-2.3)
A 		61.8
(-2.6)
A 		79.8
(-2.1)
M 		50.8
(-3)
A 		187
avr 203.7
(3) 		132.6
(0.3) 		66.2
(-2.3) 		63.4
(-2.4) 		80.9
(-1.7) 		48.3
(-3) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180813_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14876
Sequence Type Exemplar sequence
Representative Public ID C01B4.7 NCBI
Target Description C01B4.7 /REP_DB=WormBase Gene ID /WP=CE20476 /TR=Q9UAT5 /GB=AAD14699.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071256(11), NM_071282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071256 NCBI Caenorhabditis elegans Y19D10A.4 (Y19D10A.4) mRNA, complete cds. 11/11 A 
NM_071282 NCBI Caenorhabditis elegans C01B4.7 (C01B4.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000008437 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2494063:2513096:1 11/11 None
GENEFINDER00000029978 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2385784:2404817:1 11/11 None
Y19D10A.4 ENSEMBL cdna:known chromosome:CEL140:V:2385784:2393975:1 gene:Y19D10A.4 11/11 A 
C01B4.7 ENSEMBL cdna:known chromosome:CEL140:V:2494063:2498829:1 gene:C01B4.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008431 6/11 Cross Hyb Matching Probes None
SNAP00000029972 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2385783-2390550(+) 100.0 100.0
chrV:2494062-2498829(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y19D10A.4
C01B4.7
Entrez Gene 178718 Entrez gene
178722 Entrez gene
SwissProt Q9UAT5 EMBL-EBI
Q966D4 EMBL-EBI
WormBase CE20476 Wormbase
CE21450 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636453_AT dm
DROSGENOME1:146248_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6012 galactose metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4034 aldose 1-epimerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503657 Y19D10A.4 [Caenorhabditis elegans] gb|AAK68417.1| Hypothetical protein Y19D10A.4 [Caenorhabditis elegans] 0.0
blast AAD14699 Hypothetical protein C01B4.7 [Caenorhabditis elegans] ref|NP_503683.1| C01B4.7 [Caenorhabditis elegans] 0.0
blast CAE58098 Hypothetical protein CBG01182 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008183 EMBL-EBI Aldose 1-epimerase 2.0E-113
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-9
Pfam IPR008183 EMBL-EBI Aldose 1-epimerase 2.0E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503657.1 12 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,434-456
NP_503683.1 12 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,434-456
Y19D10A.4 12 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,434-456
C01B4.7 12 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,434-456
GENEFINDER00000008437 25 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,955-977,989-1011,1039-1061,1082-1099,1134-1156,1184-1206,1278-1300,1378-1400,1413-1430,1459-1481,1501-1523,1575-1597,1628-1650,1657-1679
GENEFINDER00000029978 25 39-61,92-114,119-141,151-173,180-202,212-231,272-294,309-328,341-363,367-389,402-424,955-977,989-1011,1039-1061,1082-1099,1134-1156,1184-1206,1278-1300,1378-1400,1413-1430,1459-1481,1501-1523,1575-1597,1628-1650,1657-1679
Sequence
Target Sequence 
>C. ELEGANS:180813_S_AT
gcacagaccgctgtgttctgtctgcgtgggtgagcttccttggcggaaacctcggcttca
tcaccctgcttctgtacggaccaacttatcttcgagaagttctgcaattcgatgtgaggt
cgactggatatatcaacgcgttaccgtatgctctttgtgcgatctataaatttggcgccg
gcaaaatttcggaccgggttacttttgccagtgataaggcaatctacacattctggctct
tctcctcgatcatcggactcggcatcggctacataatcatggcgtggacttccgaccgaa
acgtggccttcgttgcatttgcctttgccgttgtcacgtccggtcttatcataatggcat
gtgtcaagtgcctggcaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAGACCGCTGTGTTCTGTCTGC 618 315 815 Antisense
CTGTACGGACCAACTTATCTTCGAG 558 239 886 Antisense
AAGTTCTGCAATTCGATGTGAGGTC 80 157 911 Antisense
ATATCAACGCGTTACCGTATGCTCT 381 19 944 Antisense
TACCGTATGCTCTTTGTGCGATCTA 465 649 956 Antisense
TTGGCGCCGGCAAAATTTCGGACCG 187 709 986 Antisense
GACTCGGCATCGGCTACATAATCAT 337 373 1070 Antisense
ATAATCATGGCGTGGACTTCCGACC 681 23 1087 Antisense
GAAACGTGGCCTTCGTTGCATTTGC 467 357 1112 Antisense
TTGTCACGTCCGGTCTTATCATAAT 73 707 1145 Antisense
GCATGTGTCAAGTGCCTGGCAATGA 278 311 1171 Antisense
Sequence Source Affymetrix Proprietary Database