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[180812_s_at]

Description K01G5.8B /REP_DB=WormBase Gene ID /WP=CE16199 /TR=O45634 /GB=CAB07863.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 83      6grp_total > 68      4grp_total > 12      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 600
1 2 3 4 range
A 545.5
(-1.8)
P 		478.6
(-2.5)
P 		430.4
(-3)
P 		1030.5
(3)
P 		600
B 592.4
(-0.8)
P 		552.7
(-1.4)
P 		444.4
(-3)
P 		853.4
(3)
P 		409
C 643.6
(-1.2)
P 		522.3
(-2.6)
P 		490.2
(-3)
P 		1000.2
(3)
P 		510
avr 593.8
(-1.4) 		517.9
(-2.3) 		455
(-3) 		961.4
(3) 		506

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 366.8
(-2)
P 		546.6
(0.5)
P 		321.4
(-2.6)
P 		589.8
(1.2)
P 		293.1
(-3)
P 		721.6
(3)
P 		429
B 373.3
(-1.5)
P 		311.4
(-3)
P 		341.9
(-2.3)
P 		356.5
(-1.9)
P 		429.1
(-0.2)
P 		562.6
(3)
P 		251
C 667.5
(1.8)
P 		297
(-3)
P 		542.7
(0.2)
P 		368.3
(-2.1)
P 		586.2
(0.8)
P 		757.4
(3)
P 		460
avr 469.2
(-1.3) 		385
(-3) 		402
(-2.7) 		438.2
(-1.9) 		436.1
(-2) 		680.5
(3) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 198.6
(3)
P 		103.9
(-3)
P 		112.5
(-2.5)
P 		150.8
(-0)
P 		95
B 188.9
(3)
P 		136.5
(-0.7)
P 		103
(-3)
P 		181.9
(2.5)
P 		86
C 213
(3)
P 		150.2
(-3)
P 		170.9
(-1)
P 		168.7
(-1.2)
P 		63
avr 200.2
(3) 		130.2
(-2.9) 		128.8
(-3) 		167.1
(0.2) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 67.6
(-3)
P 		194.4
(3)
P 		70
(-2.9)
P 		149.6
(0.9)
P 		88.5
(-2)
P 		175.7
(2.1)
P 		127
B 129.9
(-0.8)
P 		103.7
(-2)
P 		83
(-3)
P 		94.4
(-2.5)
P 		174.4
(1.3)
P 		209.8
(3)
P 		127
C 247.4
(2.8)
P 		90.6
(-2.4)
P 		138.1
(-0.9)
P 		74.1
(-3)
P 		189.7
(0.9)
P 		253.6
(3)
P 		180
avr 148.3
(-0.3) 		129.6
(-1.3) 		97
(-3) 		106
(-2.5) 		150.9
(-0.2) 		213
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180812_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7588
Sequence Type Exemplar sequence
Representative Public ID K01G5.8B NCBI
Target Description K01G5.8B /REP_DB=WormBase Gene ID /WP=CE16199 /TR=O45634 /GB=CAB07863.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066965(11), NM_066964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066965 NCBI Caenorhabditis elegans K01G5.8a (K01G5.8) mRNA, complete cds. 11/11 None
NM_066964 NCBI Caenorhabditis elegans K01G5.8b (K01G5.8) mRNA, complete cds. 11/11 None
K01G5.8a.1 ENSEMBL cdna:known chromosome:CEL140:III:10740143:10740647:-1 gene:K01G5.8 11/11 None
K01G5.8a.2 ENSEMBL cdna:known chromosome:CEL140:III:10740145:10740651:-1 gene:K01G5.8 11/11 None
K01G5.8b ENSEMBL cdna:known chromosome:CEL140:III:10740157:10740643:-1 gene:K01G5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10740233-10740639(-) 100.0 100.0
Public Domain and Genome References
Ensembl K01G5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07863 Hypothetical protein K01G5.8b [Caenorhabditis elegans] emb|CAB07248.1| Hypothetical protein K01G5.8b [Caenorhabditis elegans] ref|NP_499365.1| K01G5.8b [Caenorhabditis elegans] 5.0E-47
blast CAB07862 Hypothetical protein K01G5.8a [Caenorhabditis elegans] emb|CAB07247.1| Hypothetical protein K01G5.8a [Caenorhabditis elegans] ref|NP_499366.1| K01G5.8a [Caenorhabditis elegans] 3.0E-45
blast CAB07863 Hypothetical protein K01G5.8b [Caenorhabditis elegans] emb|CAB07248.1| Hypothetical protein K01G5.8b [Caenorhabditis elegans] ref|NP_499365.1| K01G5.8b [Caenorhabditis elegans] 1.0E-43
blast CAB07862 Hypothetical protein K01G5.8a [Caenorhabditis elegans] emb|CAB07247.1| Hypothetical protein K01G5.8a [Caenorhabditis elegans] ref|NP_499366.1| K01G5.8a [Caenorhabditis elegans] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:180812_S_AT
gacacagtcgtcaaaggatctctcaagttgaaaaaagtatcgacagaagcgccaaagaag
actaaaaagagtaagccagctatggacttgaagcaagttgacatgacgatcagaagagat
tccagaaacacttccggcggtgggccacacaaaaccgaggctgagcttcggttcgaggct
agaagacaggcgaacatggcggaaagaatgctgaaacaggcggcgttgagtcatcgtgaa
aaggtggagaagttgaacaagcagctcggcgagatgacagaattcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACAGTCGTCAAAGGATCTCTCA 691 365 19 Antisense
AAGTATCGACAGAAGCGCCAAAGAA 214 157 53 Antisense
GTAAGCCAGCTATGGACTTGAAGCA 468 455 89 Antisense
GAAGCAAGTTGACATGACGATCAGA 249 341 108 Antisense
CGGCGGTGGGCCACACAAAACCGAG 66 1 153 Antisense
CCACACAAAACCGAGGCTGAGCTTC 420 275 163 Antisense
GCTGAGCTTCGGTTCGAGGCTAGAA 106 295 178 Antisense
GAAGACAGGCGAACATGGCGGAAAG 94 341 200 Antisense
GAAACAGGCGGCGTTGAGTCATCGT 568 355 231 Antisense
AGTTGAACAAGCAGCTCGGCGAGAT 633 63 269 Antisense
GCTCGGCGAGATGACAGAATTCAAC 292 415 282 Antisense
Sequence Source Affymetrix Proprietary Database