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[180811_at]

Description R08C7.6 /REP_DB=WormBase Gene ID /WP=CE07429 /TR=Q21837 /GB=AAC48075.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 23.5
(-0)
A 		43.5
(3)
A 		3.7
(-3)
A 		43.2
(3)
A 		40
B 1.8
(-3)
A 		1.9
(-3)
A 		39.3
(3)
A 		15.2
(-0.9)
A 		38
C 8
(1.6)
A 		9.1
(3)
A 		4.3
(-3)
A 		6.9
(0.3)
A 		5
avr 11.1
(-3) 		18.2
(1) 		15.8
(-0.4) 		21.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 4.8
(-3)
A 		17.9
(-1.5)
A 		53.1
(2.4)
A 		20.1
(-1.3)
A 		20.9
(-1.2)
A 		58.6
(3)
A 		54
B 21.2
(0.8)
A 		2.5
(-3)
A 		20.3
(0.6)
A 		15.3
(-0.4)
A 		32.2
(3)
A 		18.6
(0.3)
P 		30
C 6.5
(-2.4)
A 		23.6
(-0.5)
A 		1.9
(-3)
A 		1.6
(-3)
A 		41.8
(1.6)
A 		54.1
(3)
P 		53
avr 10.8
(-3) 		14.7
(-2.3) 		25.1
(-0.4) 		12.3
(-2.7) 		31.6
(0.8) 		43.8
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.5
(2.4)
A 		9.4
(3)
A 		1
(-3)
A 		6.3
(0.8)
A 		8
B 0.6
(-2.9)
A 		0.5
(-3)
A 		9.1
(3)
A 		3.2
(-1.1)
A 		9
C 2.6
(3)
A 		2.6
(3)
A 		1.5
(-1.7)
A 		1.2
(-3)
A 		1
avr 3.9
(-0) 		4.2
(3) 		3.9
(-0) 		3.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.9
(-3)
A 		6.4
(-0.5)
A 		11.6
(1.8)
A 		5.1
(-1.1)
A 		6.3
(-0.6)
A 		14.3
(3)
A 		13
B 7.4
(0.2)
A 		0.8
(-3)
A 		4.9
(-1)
A 		4
(-1.4)
A 		13.1
(3)
A 		6.9
(-0)
P 		12
C 2.4
(-2.3)
A 		7.2
(-0.7)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		13.5
(1.4)
A 		18.1
(3)
P 		18
avr 3.6
(-2.7) 		4.8
(-2) 		5.7
(-1.4) 		3.1
(-3) 		11
(1.7) 		13.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180811_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10588
Sequence Type Exemplar sequence
Representative Public ID R08C7.6 NCBI
Target Description R08C7.6 /REP_DB=WormBase Gene ID /WP=CE07429 /TR=Q21837 /GB=AAC48075.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068159 NCBI Caenorhabditis elegans R08C7.6 (R08C7.6) mRNA, complete cds. 11/11 None
SNAP00000031353 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4422332:4426508:1 11/11 None
GENEFINDER00000031370 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4423331:4426508:1 11/11 None
R08C7.6 ENSEMBL cdna:known chromosome:CEL140:IV:4422332:4426508:1 gene:R08C7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4422337-4426514(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08C7.6
Entrez Gene 187697 Entrez gene
SwissProt Q21837 EMBL-EBI
WormBase CE34583 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48075 Hypothetical protein R08C7.6 [Caenorhabditis elegans] ref|NP_500560.2| R08C7.6 [Caenorhabditis elegans] 0.0
blast NP_494450 Y25C1A.1 [Caenorhabditis elegans] gb|AAD12835.1| Hypothetical protein Y25C1A.1 [Caenorhabditis elegans] 1.0E-140
blast NP_494450 Y25C1A.1 [Caenorhabditis elegans] gb|AAD12835.1| Hypothetical protein Y25C1A.1 [Caenorhabditis elegans] 1.0E-115
blast CAE71799 Hypothetical protein CBG18810 [Caenorhabditis briggsae] 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:180811_AT
attcggtggcgattgtacattctgagatagacactgaattccgaccaatgtcagattctc
agtcagtaccggtttggtgtaaatttggaaggaagatgaattactttgttgatctaccaa
agggctatactcactacgagagagctaacggaatgcatgttggacataaagttgtttcaa
tgatacttccatttgataaagcaatgaagtattgtcaagatgacggtggtgcacaattgg
gcggattcaatgataaagccgagtttgaagcgattgataagctgatttctaagaaagtac
atcattggattggaaatagacgacgcccagattgcccaggtttttatttccacagcgacc
caaaccaccaatgcggtcataataaaattcacgaatggctcaacaacgttgcaactgaag
acatcccaattgaactatggggcttcaaacaaccggatcatgcttggaaacctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGGTGGCGATTGTACATTCTGA 533 9 1064 Antisense
GATAGACACTGAATTCCGACCAATG 471 425 1089 Antisense
GATTCTCAGTCAGTACCGGTTTGGT 550 431 1117 Antisense
ACCAAAGGGCTATACTCACTACGAG 477 83 1179 Antisense
GACGGTGGTGCACAATTGGGCGGAT 324 375 1285 Antisense
TGGAAATAGACGACGCCCAGATTGC 623 547 1374 Antisense
GATTGCCCAGGTTTTTATTTCCACA 46 435 1393 Antisense
CGACCCAAACCACCAATGCGGTCAT 30 251 1419 Antisense
CAACGTTGCAACTGAAGACATCCCA 278 187 1467 Antisense
TGGGGCTTCAAACAACCGGATCATG 308 551 1501 Antisense
AACCGGATCATGCTTGGAAACCTCA 564 145 1514 Antisense
Sequence Source Affymetrix Proprietary Database