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[180809_at]

Description C23H5.3 /REP_DB=WormBase Gene ID /WP=CE17438 /TR=O61830 /GB=AAC17531.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 39      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 12.9
(3)
A 		8
(-2.3)
A 		9
(-1.2)
A 		7.3
(-3)
A 		6
B 7.6
(-0.9)
A 		5.5
(-3)
A 		8
(-0.5)
A 		11.5
(3)
A 		6
C 79
(3)
A 		7.7
(-3)
A 		18
(-2.1)
A 		20.9
(-1.9)
A 		71
avr 33.2
(3) 		7.1
(-3) 		11.7
(-1.9) 		13.2
(-1.6) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 15.7
(-2)
A 		7.3
(-2.8)
A 		67.8
(3)
A 		4.7
(-3)
A 		9
(-2.6)
A 		15.6
(-2)
A 		63
B 8
(-3)
A 		12.7
(-1.2)
A 		16.2
(0.2)
A 		8.5
(-2.8)
A 		23.6
(3)
A 		8.2
(-2.9)
A 		16
C 43.9
(3)
A 		24
(-0.1)
A 		6.3
(-2.8)
A 		4.9
(-3)
A 		11.5
(-2)
A 		36.3
(1.8)
A 		39
avr 22.5
(1.1) 		14.7
(-0.8) 		30.1
(3) 		6
(-3) 		14.7
(-0.8) 		20
(0.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4.7
(3)
A 		1.7
(-2)
A 		2.3
(-1)
A 		1.1
(-3)
A 		4
B 2.4
(2.5)
A 		1.3
(-3)
A 		1.8
(-0.5)
A 		2.5
(3)
A 		1
C 26.2
(3)
A 		2.2
(-3)
A 		6.3
(-2)
A 		3.5
(-2.7)
A 		24
avr 11.1
(3) 		1.7
(-3) 		3.5
(-1.9) 		2.4
(-2.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.9
(-2.3)
A 		2.6
(-2.4)
A 		14.8
(3)
A 		1.2
(-3)
A 		2.7
(-2.3)
A 		3.8
(-1.9)
A 		14
B 2.8
(-2.6)
A 		4.2
(-1.4)
A 		3.9
(-1.7)
A 		2.3
(-3)
A 		9.6
(3)
A 		3.1
(-2.3)
A 		7
C 16.3
(3)
A 		7.3
(-0.5)
A 		1.6
(-2.8)
A 		1
(-3)
A 		3.7
(-1.9)
A 		12.2
(1.4)
A 		15
avr 7.3
(3) 		4.7
(0.3) 		6.8
(2.5) 		1.5
(-3) 		5.3
(0.9) 		6.4
(2.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10886
Sequence Type Exemplar sequence
Representative Public ID C23H5.3 NCBI
Target Description C23H5.3 /REP_DB=WormBase Gene ID /WP=CE17438 /TR=O61830 /GB=AAC17531.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067764 NCBI Caenorhabditis elegans X-BoX promoter element regulated family member (xbx-4) (xbx-4) mRNA, complete cds. 11/11 None
GENEFINDER00000034545 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2114672:2116318:1 11/11 None
C23H5.3 ENSEMBL cdna:known chromosome:CEL140:IV:2114672:2115624:1 gene:C23H5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034536 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2114677-2115630(+) 97.32 100.0
Public Domain and Genome References
Gene Title
Gene Symbol xbx-4
Ensembl C23H5.3
Entrez Gene 182822 Entrez gene
SwissProt O61830 EMBL-EBI
WormBase CE17438 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17531 X-box promoter element regulated protein 4 [Caenorhabditis elegans] ref|NP_500165.1| X-BoX promoter element regulated family member (xbx-4) [Caenorhabditis elegans] 7.0E-59
blast AAC17531 X-box promoter element regulated protein 4 [Caenorhabditis elegans] ref|NP_500165.1| X-BoX promoter element regulated family member (xbx-4) [Caenorhabditis elegans] 8.0E-54
blast CAE65559 Hypothetical protein CBG10549 [Caenorhabditis briggsae] 7.0E-27
blast CAE65559 Hypothetical protein CBG10549 [Caenorhabditis briggsae] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:180809_AT
ccacgtcatcaaagccaacacttcgtggaaaaattccaaattcgaaggcagctgaggagt
ttctggattcatgggataacgcggttttcgatgggaaaagtactggtgaccccgaattgg
accgagaagcatcactatggagggacaaatttcctcatttaaggattaccggatcccgtt
ttgaatctcagaaagtgacgcaccccatcccagttgacagcttgagctttcaaaaatcaa
taattcaacactccaagtctgcaaacgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGTCATCAAAGCCAACACTTCG 337 275 35 Antisense
GGCAGCTGAGGAGTTTCTGGATTCA 628 535 81 Antisense
GGATTCATGGGATAACGCGGTTTTC 424 477 99 Antisense
GAAAAGTACTGGTGACCCCGAATTG 494 351 129 Antisense
GTGACCCCGAATTGGACCGAGAAGC 32 483 140 Antisense
GACCGAGAAGCATCACTATGGAGGG 246 383 154 Antisense
TTACCGGATCCCGTTTTGAATCTCA 296 679 200 Antisense
ATCTCAGAAAGTGACGCACCCCATC 303 33 219 Antisense
CCATCCCAGTTGACAGCTTGAGCTT 677 271 239 Antisense
AAATCAATAATTCAACACTCCAAGT 377 115 268 Antisense
AACACTCCAAGTCTGCAAACGCAAT 79 135 281 Antisense
Sequence Source Affymetrix Proprietary Database