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[180808_at]

Description W06G6.11 /REP_DB=WormBase Gene ID /WP=CE20156 /TR=Q9U342 /GB=CAB63323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 32.7
(-2.7)
A 		8.6
(-3)
A 		46.2
(-2.6)
A 		513.6
(3)
M 		505
B 45.5
(-2.6)
A 		31
(-2.8)
A 		21.1
(-3)
A 		413.9
(3)
P 		393
C 30.7
(-2.7)
A 		6.8
(-3)
A 		15.9
(-2.9)
A 		460
(3)
P 		453
avr 36.3
(-2.7) 		15.5
(-3) 		27.7
(-2.8) 		462.5
(3) 		447

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 55.2
(-1.8)
A 		19.6
(-2.7)
A 		5.5
(-3)
A 		54.9
(-1.8)
A 		69.8
(-1.4)
A 		250.6
(3)
P 		245
B 5.3
(-3)
A 		28.1
(-2.3)
A 		38.4
(-2)
A 		58
(-1.3)
A 		93.3
(-0.2)
A 		194.8
(3)
P 		190
C 23.7
(-2.6)
A 		41.4
(-2.2)
A 		9.1
(-3)
A 		58.3
(-1.8)
A 		55.9
(-1.9)
A 		255.6
(3)
A 		247
avr 28.1
(-2.7) 		29.7
(-2.7) 		17.7
(-3) 		57.1
(-1.9) 		73
(-1.5) 		233.7
(3) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 11.9
(-2.2)
A 		1.9
(-3)
A 		12.1
(-2.2)
A 		75.2
(3)
M 		73
B 14.5
(-2.3)
A 		7.7
(-2.8)
A 		4.9
(-3)
A 		88.2
(3)
P 		83
C 10.1
(-2.4)
A 		1.9
(-3)
A 		5.5
(-2.7)
A 		77.6
(3)
P 		76
avr 12.2
(-2.3) 		3.8
(-3) 		7.5
(-2.7) 		80.3
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 10.2
(-2.1)
A 		7
(-2.4)
A 		1.2
(-3)
A 		13.9
(-1.7)
A 		21.1
(-1)
A 		61
(3)
P 		60
B 1.9
(-3)
A 		9.3
(-2.4)
A 		9.3
(-2.4)
A 		15.4
(-1.9)
A 		37.9
(0.1)
A 		72.6
(3)
P 		71
C 8.8
(-2.5)
A 		12.6
(-2.3)
A 		2.3
(-3)
A 		11.7
(-2.3)
A 		18.1
(-1.9)
A 		85.6
(3)
A 		83
avr 7
(-2.8) 		9.6
(-2.5) 		4.3
(-3) 		13.7
(-2.2) 		25.7
(-1.1) 		73.1
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180808_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13273
Sequence Type Exemplar sequence
Representative Public ID W06G6.11 NCBI
Target Description W06G6.11 /REP_DB=WormBase Gene ID /WP=CE20156 /TR=Q9U342 /GB=CAB63323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074813 NCBI Caenorhabditis elegans W06G6.11 (W06G6.11) mRNA, complete cds. 11/11 None
W06G6.11 ENSEMBL cdna:known chromosome:CEL140:V:16650618:16652004:-1 gene:W06G6.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000235 5/11 Cross Hyb Matching Probes None
GENEFINDER00000000246 5/11 Cross Hyb Matching Probes None
GENEFINDER00000000247 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16650617-16652004(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06G6.11
Entrez Gene 189261 Entrez gene
SwissProt Q9U342 EMBL-EBI
WormBase CE20156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63323 Hypothetical protein W06G6.11 [Caenorhabditis elegans] ref|NP_507214.1| W06G6.11 [Caenorhabditis elegans] 2.0E-69
Sequence
Target Sequence 
>C. ELEGANS:180808_AT
cagaattgttcactttttccaccatgtccaatgacccaagtggaacttcttgcaactatc
cggcaaatttaatcactaatcagccgccgttcctacctgactctgatagaatcacaggaa
aaaccgaaaagaagccagaaaagaaatcagaagaaaacacgtgtttcacgaaagaagact
gtgggaaaaagaggataaaaacgcggaggaaagttcgtgctgtacagcggaaaaatgttg
cttggcgtgcttgggatgtgaaatatgcaccagctgggtttcaattttcgtggattgttg
caagatatgcgcaaactctgattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAATTGTTCACTTTTTCCACCAT 215 205 59 Antisense
TTTCCACCATGTCCAATGACCCAAG 301 669 74 Antisense
GTGGAACTTCTTGCAACTATCCGGC 397 491 98 Antisense
GCAACTATCCGGCAAATTTAATCAC 619 319 110 Antisense
AATTTAATCACTAATCAGCCGCCGT 502 175 124 Antisense
CGTTCCTACCTGACTCTGATAGAAT 706 247 146 Antisense
GAGGAAAGTTCGTGCTGTACAGCGG 705 403 264 Antisense
GCGGAAAAATGTTGCTTGGCGTGCT 273 293 285 Antisense
GCTTGGCGTGCTTGGGATGTGAAAT 258 307 298 Antisense
GCACCAGCTGGGTTTCAATTTTCGT 330 315 325 Antisense
GCAAGATATGCGCAAACTCTGATTG 128 321 358 Antisense
Sequence Source Affymetrix Proprietary Database