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[180807_at]

Description ZC477.6 /REP_DB=WormBase Gene ID /WP=CE05062 /TR=Q23343 /GB=AAK19012.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 2.5
(-3)
A 		28.2
(3)
A 		18.9
(0.8)
A 		21.5
(1.4)
A 		26
B 1.2
(-1.6)
A 		2.5
(3)
A 		0.8
(-3)
A 		2.1
(1.6)
A 		2
C 3.1
(-2.7)
A 		1.1
(-3)
A 		1.6
(-2.9)
A 		44
(3)
A 		43
avr 2.3
(-3) 		10.6
(-0.5) 		7.1
(-1.6) 		22.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3
(3)
A 		0.5
(-3)
A 		2
(0.6)
A 		2.6
(2)
A 		1.6
(-0.4)
A 		1.9
(0.4)
A 		3
B 0.8
(-2.9)
A 		11.4
(3)
A 		4.7
(-0.7)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		11
C 5.1
(-1.5)
A 		1.3
(-3)
A 		1.7
(-2.8)
A 		2.1
(-2.7)
A 		10
(0.5)
A 		16.3
(3)
A 		15
avr 3
(-1.4) 		4.4
(0.5) 		2.8
(-1.7) 		1.8
(-3) 		4.2
(0.2) 		6.3
(3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.9
(-3)
A 		6.1
(3)
A 		4.9
(1.6)
A 		3.1
(-0.5)
A 		5
B 0.4
(0)
A 		0.6
(3)
A 		0.2
(-3)
A 		0.4
(0)
A 		0
C 1
(-2.4)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		7.4
(3)
A 		7
avr 0.8
(-3) 		2.3
(0.2) 		1.9
(-0.6) 		3.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(1.8)
A 		0.2
(-3)
A 		0.4
(-0.6)
A 		0.7
(3)
A 		0.5
(0.6)
A 		0.5
(0.6)
A 		1
B 0.3
(-2.8)
A 		3.8
(3)
A 		1.1
(-1.5)
A 		0.2
(-3)
A 		0.4
(-2.7)
A 		0.2
(-3)
A 		4
C 1.9
(-1.2)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		3.2
(0.3)
A 		5.5
(3)
A 		5
avr 0.9
(-1.2) 		1.5
(0.9) 		0.6
(-2.3) 		0.4
(-3) 		1.4
(0.5) 		2.1
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8412
Sequence Type Exemplar sequence
Representative Public ID ZC477.6 NCBI
Target Description ZC477.6 /REP_DB=WormBase Gene ID /WP=CE05062 /TR=Q23343 /GB=AAK19012.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000039646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7101447:7103513:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7103270-7103553(-) 89.58 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK19011 Hypothetical protein ZC477.5 [Caenorhabditis elegans] ref|NP_501107.1| ZC477.5 [Caenorhabditis elegans] 1.0E-169
blast T27604 hypothetical protein ZC477.5 - Caenorhabditis elegans 1.0E-144
blast CAE61801 Hypothetical protein CBG05767 [Caenorhabditis briggsae] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:180807_AT
tacagctcggtttaaactatttacatcagatggacgtactcacatcgagaattgcgccag
caagtttgatgaatgcgccagcagtgtgacaaaggcgcacaagttttgcattatcttttt
tgaacgcagaaaatttaaaaaagagccatatgtatctctgaacatatctctgaacatttt
tacgatattgcttataacctcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGCTCGGTTTAAACTATTTACA 219 643 18 Antisense
TTTACATCAGATGGACGTACTCACA 631 671 37 Antisense
GACGTACTCACATCGAGAATTGCGC 17 379 50 Antisense
GAGAATTGCGCCAGCAAGTTTGATG 457 391 64 Antisense
CAAGTTTGATGAATGCGCCAGCAGT 616 183 78 Antisense
GCCAGCAGTGTGACAAAGGCGCACA 198 281 94 Antisense
GGCGCACAAGTTTTGCATTATCTTT 41 543 111 Antisense
AAGAGCCATATGTATCTCTGAACAT 120 153 158 Antisense
ATCTCTGAACATATCTCTGAACATT 282 33 171 Antisense
TCTGAACATTTTTACGATATTGCTT 40 609 186 Antisense
TACGATATTGCTTATAACCTCAATT 541 647 198 Antisense
Sequence Source Affymetrix Proprietary Database