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[180805_at]

Description F11D11.5 /REP_DB=WormBase Gene ID /WP=CE15796 /TR=O62154 /GB=CAB04097.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 7.8
(-1.3)
A 		19
(2.5)
A 		20.6
(3)
A 		2.9
(-3)
A 		18
B 13.9
(-3)
A 		34.6
(-0)
A 		20.7
(-2)
A 		55.6
(3)
P 		42
C 10.8
(-1.8)
A 		1.9
(-3)
A 		24.7
(0.1)
A 		45.5
(3)
P 		44
avr 10.8
(-3) 		18.5
(-1.1) 		22
(-0.2) 		34.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 33.3
(0.9)
A 		16.2
(-1.4)
A 		25.5
(-0.2)
A 		3.8
(-3)
A 		20.9
(-0.8)
A 		49.7
(3)
A 		46
B 15.1
(-1.8)
A 		10.3
(-3)
A 		26.3
(1.2)
A 		33.4
(3)
A 		14.4
(-1.9)
A 		17.4
(-1.2)
A 		23
C 17.5
(2.6)
A 		18.7
(3)
A 		16.5
(2.3)
A 		14.6
(1.6)
A 		3.6
(-2.1)
A 		1.1
(-3)
A 		18
avr 22
(2.5) 		15.1
(-1.7) 		22.8
(3) 		17.3
(-0.4) 		13
(-3) 		22.7
(2.9) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.9
(0)
A 		4.1
(1.4)
A 		5.4
(3)
A 		0.4
(-3)
A 		5
B 4.4
(-3)
A 		8.5
(0.3)
A 		4.8
(-2.7)
A 		11.9
(3)
P 		8
C 3.6
(-0.8)
A 		0.6
(-3)
A 		8.6
(3)
A 		7.7
(2.3)
P 		8
avr 3.6
(-3) 		4.4
(-1.5) 		6.3
(2.2) 		6.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.1
(-0.2)
A 		5.8
(-0.4)
A 		5.5
(-0.6)
A 		1
(-3)
A 		6.3
(-0.1)
A 		12.1
(3)
A 		11
B 5.2
(-1)
A 		3.4
(-3)
A 		6.4
(0.3)
A 		8.8
(3)
A 		5.8
(-0.3)
A 		6.5
(0.4)
A 		5
C 6.5
(3)
A 		5.7
(2.2)
A 		4.2
(0.7)
A 		2.9
(-0.5)
A 		1.2
(-2.2)
A 		0.4
(-3)
A 		6
avr 5.9
(1.9) 		5
(-0.7) 		5.4
(0.4) 		4.2
(-3) 		4.4
(-2.4) 		6.3
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13260
Sequence Type Exemplar sequence
Representative Public ID F11D11.5 NCBI
Target Description F11D11.5 /REP_DB=WormBase Gene ID /WP=CE15796 /TR=O62154 /GB=CAB04097.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075260 NCBI Caenorhabditis elegans F11D11.5 (F11D11.5) mRNA, complete cds. 11/11 None
SNAP00000039938 ENSEMBL cdna:SNAP chromosome:CEL140:V:18756074:18757002:-1 11/11 None
GENEFINDER00000039953 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18753292:18758872:-1 11/11 None
F11D11.5 ENSEMBL cdna:known chromosome:CEL140:V:18756074:18757002:-1 gene:F11D11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18756073-18757002(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11D11.5
Entrez Gene 184352 Entrez gene
SwissProt O62154 EMBL-EBI
WormBase CE15796 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04097 Hypothetical protein F11D11.5 [Caenorhabditis elegans] ref|NP_507661.1| F11D11.5 [Caenorhabditis elegans] 1.0E-142
blast CAB04097 Hypothetical protein F11D11.5 [Caenorhabditis elegans] ref|NP_507661.1| F11D11.5 [Caenorhabditis elegans] 1.0E-138
blast CAB04097 Hypothetical protein F11D11.5 [Caenorhabditis elegans] ref|NP_507661.1| F11D11.5 [Caenorhabditis elegans] 1.0E-137
blast CAB04098 Hypothetical protein F11D11.6 [Caenorhabditis elegans] ref|NP_507660.1| F11D11.6 [Caenorhabditis elegans] 1.0E-131
blast CAB04102 Hypothetical protein F11D11.7 [Caenorhabditis elegans] ref|NP_507659.1| F11D11.7 [Caenorhabditis elegans] 6.0E-67
blast CAB04102 Hypothetical protein F11D11.7 [Caenorhabditis elegans] ref|NP_507659.1| F11D11.7 [Caenorhabditis elegans] 2.0E-66
blast CAB04099 Hypothetical protein F11D11.8 [Caenorhabditis elegans] ref|NP_507658.1| F11D11.8 [Caenorhabditis elegans] 7.0E-64
blast CAB04099 Hypothetical protein F11D11.8 [Caenorhabditis elegans] ref|NP_507658.1| F11D11.8 [Caenorhabditis elegans] 5.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039953 1 64-86
Sequence
Target Sequence 
>C. ELEGANS:180805_AT
gattcagattgtttactggcattctttaattcagtgtgttcgcattattatacagaattg
ccagatgccacttgtcctgcctcctacaaggaaatcaagttctctgtgacttctaccaac
ggagagatatactcttggaagaaaactgataatggatggatttacaaaaactgcaatgat
ggatggacaagatatccaaaaagtgatggaactatcttatgtgtgaaaataaaattggag
aaagtaactcaacaagttgcaaaggaaaggtgtattgaagaaagtgcagtgctcgctcgt
gttgagacatccgaagaatgcgaatggaaacatggttttgtagaaaaccgtagtgctaaa
cttgtagaaaccgtagtgctaaactctatgggaactgatactgatattttttggataaac
ggaagagcaaccggtgatataaacctggatgattgcattaatcaatatgaccattattct
cagttcatatcctatgagacaagcgctggaaactgtgtggcattattcgatagcatgtat
ccgttttctttatctgatctaccatgcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAGATTGTTTACTGGCATTCT 215 431 169 Antisense
GCATTCTTTAATTCAGTGTGTTCGC 4 309 187 Antisense
CAAGTTCTCTGTGACTTCTACCAAC 234 185 264 Antisense
AAGAAAGTGCAGTGCTCGCTCGTGT 231 153 446 Antisense
GCTCGCTCGTGTTGAGACATCCGAA 78 299 459 Antisense
GAAACCGTAGTGCTAAACTCTATGG 12 337 535 Antisense
GAGCAACCGGTGATATAAACCTGGA 115 389 593 Antisense
ATTATTCTCAGTTCATATCCTATGA 673 13 641 Antisense
CAAGCGCTGGAAACTGTGTGGCATT 469 185 668 Antisense
AGCATGTATCCGTTTTCTTTATCTG 177 79 700 Antisense
TTCTTTATCTGATCTACCATGCGAT 125 689 714 Antisense
Sequence Source Affymetrix Proprietary Database