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[180804_at]

Description Y53H1B.4 /REP_DB=WormBase Gene ID /WP=CE22435 /TR=Q9U249 /GB=CAB60412.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 23.8
(-1.5)
A 		9.2
(-3)
A 		32.6
(-0.7)
A 		69.6
(3)
A 		60
B 7.1
(-3)
A 		46.2
(3)
A 		12.3
(-2.2)
A 		37.7
(1.7)
A 		39
C 2.8
(-3)
A 		51
(2.5)
A 		11.3
(-2)
A 		55.4
(3)
A 		53
avr 11.2
(-3) 		35.5
(0.4) 		18.7
(-2) 		54.2
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 10.8
(3)
A 		5.8
(-0.3)
A 		1.7
(-3)
A 		5.6
(-0.4)
A 		4.9
(-0.9)
A 		6.7
(0.3)
A 		9
B 36.6
(3)
A 		32.4
(2.2)
A 		25.7
(0.9)
A 		5.2
(-3)
A 		14.5
(-1.2)
A 		15.3
(-1.1)
A 		31
C 2.1
(-3)
A 		2.5
(-2.9)
A 		29.4
(3)
A 		10.6
(-1.1)
A 		2.5
(-2.9)
A 		12.5
(-0.7)
A 		27
avr 16.5
(1.8) 		13.6
(0.3) 		18.9
(3) 		7.1
(-3) 		7.3
(-2.9) 		11.5
(-0.8) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.7
(1.9)
A 		2
(-3)
A 		8.5
(1.8)
A 		10.2
(3)
A 		8
B 2.3
(-3)
A 		11.4
(3)
A 		2.9
(-2.6)
A 		8
(0.8)
A 		9
C 0.9
(-3)
A 		14.6
(3)
A 		3.9
(-1.7)
A 		9.3
(0.7)
A 		14
avr 4
(-3) 		9.3
(3) 		5.1
(-1.8) 		9.2
(2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(2.6)
A 		2.1
(3)
A 		0.4
(-3)
A 		1.4
(0.5)
A 		1.5
(0.9)
A 		1.6
(1.2)
A 		2
B 12.7
(3)
A 		10.8
(2)
A 		6.2
(-0.5)
A 		1.4
(-3)
A 		5.9
(-0.6)
A 		5.7
(-0.7)
A 		11
C 0.8
(-3)
A 		0.8
(-3)
A 		7.5
(3)
A 		2.1
(-1.8)
A 		0.8
(-3)
A 		4.2
(0)
A 		7
avr 5.2
(3) 		4.6
(2) 		4.7
(2.2) 		1.6
(-3) 		2.7
(-1.2) 		3.8
(0.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180804_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.506
Sequence Type Exemplar sequence
Representative Public ID Y53H1B.4 NCBI
Target Description Y53H1B.4 /REP_DB=WormBase Gene ID /WP=CE22435 /TR=Q9U249 /GB=CAB60412.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060501 NCBI Caenorhabditis elegans Y53H1B.4 (Y53H1B.4) mRNA, complete cds. 11/11 None
GENEFINDER00000041762 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11308867:11309786:1 11/11 None
Y53H1B.4 ENSEMBL cdna:known chromosome:CEL140:I:11308867:11309786:1 gene:Y53H1B.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041758 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11308797-11309717(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53H1B.4
Entrez Gene 190247 Entrez gene
SwissProt Q9U249 EMBL-EBI
WormBase CE22435 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60412 Hypothetical protein Y53H1B.4 [Caenorhabditis elegans] ref|NP_492902.1| Y53H1B.4 [Caenorhabditis elegans] 1.0E-107
Sequence
Target Sequence 
>C. ELEGANS:180804_AT
gattgtctcaaattgcgcatactttgttgtatgtgtgtatctccgtaccgatcgcaaatt
tagtctagactgtgtaattcgaagccctaccaagatgaaccatatgaaatttgattttgt
ccccaaaccaagagagttctacacaaatagtctacatgaagcttttgtcaagtatggaaa
agccgagaagtttgaaaatgagcaattgatattctatacttgggaattttcgagtaatca
tggtatcatgttcatggttgaaaatcatatgaataggtttgtcagtgtcaaaggaagtca
agatgagaccgggtacgagatcagccaatgtttcttacaatttgagacaatctctccaaa
gtcccggcacattgtgggtggattttattgtgaatattggaagacgaaatgtaatgttaa
actggagtacaccgtatcccgttttgcatttgctccgttttattggcttgacctacaaca
agattgccgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTCTCAAATTGCGCATACTTT 478 435 33 Antisense
TGTATGTGTGTATCTCCGTACCGAT 407 557 60 Antisense
CGTACCGATCGCAAATTTAGTCTAG 209 245 76 Antisense
GACTGTGTAATTCGAAGCCCTACCA 344 375 100 Antisense
GAAGCCCTACCAAGATGAACCATAT 362 343 113 Antisense
GAGACCGGGTACGAGATCAGCCAAT 233 395 337 Antisense
AAGTCCCGGCACATTGTGGGTGGAT 689 121 391 Antisense
TAAACTGGAGTACACCGTATCCCGT 27 315 450 Antisense
CCGTTTTGCATTTGCTCCGTTTTAT 362 263 471 Antisense
GCTCCGTTTTATTGGCTTGACCTAC 681 297 484 Antisense
TGACCTACAACAAGATTGCCGCACT 151 571 501 Antisense
Sequence Source Affymetrix Proprietary Database