[Home] | [Total List]

[180803_at] 7TM chemoreceptor, sri family

Description Y61B8B.1 /REP_DB=WormBase Gene ID /WP=CE16668 /TR=O45967 /GB=CAA16428.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 18      6grp_total_sub > Hat      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 44.2
(-0.8)
A 		19.7
(-3)
A 		45.5
(-0.6)
A 		85.3
(3)
A 		66
B 32
(-0.2)
A 		56.5
(3)
M 		11.2
(-3)
A 		51.3
(2.3)
P 		45
C 16.4
(-3)
A 		53.1
(-0.5)
A 		25.3
(-2.4)
A 		105.9
(3)
A 		90
avr 30.9
(-2.6) 		43.1
(-1.2) 		27.3
(-3) 		80.8
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 43.8
(-0.9)
A 		54.4
(0.8)
P 		30.4
(-3)
A 		56.5
(1.1)
P 		37
(-2)
A 		68.2
(3)
P 		38
B 44.5
(-1.7)
A 		60.8
(0.8)
M 		35.6
(-3)
P 		75.9
(3)
A 		54.9
(-0.1)
M 		42
(-2)
P 		40
C 46.4
(-1.8)
A 		72.5
(2.6)
P 		74.7
(3)
P 		52.2
(-0.8)
A 		61.4
(0.8)
P 		39.1
(-3)
P 		36
avr 44.9
(-3) 		62.6
(3) 		46.9
(-2.3) 		61.5
(2.6) 		51.1
(-0.9) 		49.8
(-1.3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.1
(3)
A 		4.3
(-3)
A 		11.9
(0.9)
A 		12.5
(1.2)
A 		12
B 10.2
(1)
A 		14
(3)
M 		2.6
(-3)
A 		10.9
(1.4)
P 		11
C 5.4
(-3)
A 		15.3
(1.8)
A 		8.8
(-1.4)
A 		17.9
(3)
A 		13
avr 10.6
(-0.2) 		11.2
(0.4) 		7.8
(-3) 		13.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.1
(-2.3)
A 		19.4
(3)
P 		6.6
(-3)
A 		14.3
(0.6)
P 		11.2
(-0.8)
A 		16.6
(1.7)
P 		13
B 15.5
(0)
A 		20.2
(2.1)
M 		8.6
(-3)
P 		20.1
(2)
A 		22.3
(3)
M 		15.7
(0.1)
P 		14
C 17.2
(0.5)
A 		22.1
(3)
P 		19
(1.4)
P 		10.5
(-3)
A 		19.9
(1.9)
P 		13.1
(-1.7)
P 		12
avr 13.6
(-1.6) 		20.6
(3) 		11.4
(-3) 		15
(-0.7) 		17.8
(1.2) 		15.1
(-0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13250
Sequence Type Exemplar sequence
Representative Public ID Y61B8B.1 NCBI
Target Description Y61B8B.1 /REP_DB=WormBase Gene ID /WP=CE16668 /TR=O45967 /GB=CAA16428.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074979 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-70) (sri-70) mRNA, complete cds. 11/11 None
SNAP00000018267 ENSEMBL cdna:SNAP chromosome:CEL140:V:17305631:17306907:1 10/11 None
GENEFINDER00000018273 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17305631:17307015:1 10/11 None
Y61B8B.1 ENSEMBL cdna:known chromosome:CEL140:V:17305631:17307015:1 gene:Y61B8B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17305630-17306907(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-70
Ensembl Y61B8B.1
Entrez Gene 190450 Entrez gene
SwissProt O45967 EMBL-EBI
WormBase CE33739 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16428 Hypothetical protein Y61B8B.1 [Caenorhabditis elegans] ref|NP_507380.2| Serpentine Receptor, class I family member (sri-70) [Caenorhabditis elegans] 1.0E-178
blast CAA16428 Hypothetical protein Y61B8B.1 [Caenorhabditis elegans] ref|NP_507380.2| Serpentine Receptor, class I family member (sri-70) [Caenorhabditis elegans] 1.0E-175
blast CAA20952 Hypothetical protein Y102A5C.32 [Caenorhabditis elegans] ref|NP_507303.1| Serpentine Receptor, class I family member (sri-69) [Caenorhabditis elegans] 1.0E-151
blast CAA16428 Hypothetical protein Y61B8B.1 [Caenorhabditis elegans] ref|NP_507380.2| Serpentine Receptor, class I family member (sri-70) [Caenorhabditis elegans] 1.0E-137
blast CAA20952 Hypothetical protein Y102A5C.32 [Caenorhabditis elegans] ref|NP_507303.1| Serpentine Receptor, class I family member (sri-69) [Caenorhabditis elegans] 1.0E-116
blast CAD88220 Hypothetical protein Y60A3A.22 [Caenorhabditis elegans] ref|NP_001024272.1| Serpentine Receptor, class I family member (sri-67) [Caenorhabditis elegans] 5.0E-79
blast CAD88220 Hypothetical protein Y60A3A.22 [Caenorhabditis elegans] ref|NP_001024272.1| Serpentine Receptor, class I family member (sri-67) [Caenorhabditis elegans] 7.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.7E-73
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.2E-54
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.5E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507380.2 7 15-37,44-66,91-113,133-155,193-215,245-267,277-299
Y61B8B.1 7 15-37,44-66,91-113,133-155,193-215,245-267,277-299
SNAP00000018267 6 12-34,49-71,92-114,151-173,203-225,235-257
GENEFINDER00000018273 7 15-37,44-66,91-113,133-155,191-213,243-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:180803_AT
gcttttccagtctatccgattattgccatgcagattctcgatgttggacaggaaaagcaa
ttggaatatatcaaagaggtgcgtaatcttttcgactactacgctggattttcaactgta
ccacatttcgcaatttacgtcgactcaccactgttgtacagcgtctattctgtggtcttg
ctaacaatgggagctattttcggatgtttggtgctcgtcaacactgacctcattcgcttg
atggttcgcttgaaacctcaaatttcccagcaaaactaccaaaaacacgcggaggcaatc
caaagcctaattgtgcagatgtttgtcgccggtctctgcgcattgccactgttcggtgta
gctttcgttcttgcttttcaaatggagaatggtcaacttattgggaaactcatgtttgtg
tgttgtacctgtcattctacaattaacatgatttcgttgttcatcttttttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTTCCAGTCTATCCGATTATTG 402 305 439 Antisense
GGTGCGTAATCTTTTCGACTACTAC 148 501 516 Antisense
TTCGCAATTTACGTCGACTCACCAC 165 693 565 Antisense
GACTCACCACTGTTGTACAGCGTCT 522 369 580 Antisense
CAGCGTCTATTCTGTGGTCTTGCTA 688 203 597 Antisense
ATTTTCGGATGTTTGGTGCTCGTCA 439 13 634 Antisense
ACCTCATTCGCTTGATGGTTCGCTT 298 87 665 Antisense
AATTGTGCAGATGTTTGTCGCCGGT 519 179 747 Antisense
TGTAGCTTTCGTTCTTGCTTTTCAA 96 561 795 Antisense
GTTTGTGTGTTGTACCTGTCATTCT 686 451 852 Antisense
GATTTCGTTGTTCATCTTTTTTCCG 12 427 888 Antisense
Sequence Source Affymetrix Proprietary Database