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[180802_s_at] 7TM chemoreceptor, sru family /// 7TM chemoreceptor, sru family

Description C38C3.2 /REP_DB=WormBase Gene ID /WP=CE08638 /TR=O17077 /GB=AAB70333.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 21      6grp_total > 16      4grp_total > 18      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 46.1
(-3)
A 		81.3
(-0.3)
P 		63.1
(-1.7)
P 		124.8
(3)
P 		79
B 58.7
(-2.6)
P 		64.4
(-1.7)
P 		56.3
(-3)
P 		93.5
(3)
P 		37
C 56.6
(-3)
P 		82.6
(-1)
P 		61.5
(-2.6)
P 		133.8
(3)
P 		77
avr 53.8
(-3) 		76.1
(-0.9) 		60.3
(-2.4) 		117.4
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 110.7
(3)
P 		47.9
(-1.1)
P 		57.2
(-0.5)
P 		17.9
(-3)
A 		49
(-1)
P 		32
(-2.1)
A 		93
B 55.1
(-1.2)
P 		51.6
(-1.7)
P 		83
(3)
P 		57.2
(-0.9)
P 		51.3
(-1.8)
P 		43.2
(-3)
P 		40
C 53.3
(0.2)
M 		95.8
(3)
P 		4.1
(-3)
A 		51.3
(0.1)
P 		33.7
(-1.1)
A 		59.1
(0.6)
P 		92
avr 73
(3) 		65.1
(1.5) 		48.1
(-1.8) 		42.1
(-3) 		44.7
(-2.5) 		44.8
(-2.5) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 16.8
(-2)
A 		17.6
(0.7)
P 		16.5
(-3)
P 		18.3
(3)
P 		2
B 18.7
(1.9)
P 		15.9
(-0.5)
P 		13.1
(-3)
P 		19.9
(3)
P 		7
C 18.7
(-3)
P 		23.7
(3)
P 		21.4
(0.2)
P 		22.6
(1.7)
P 		5
avr 18.1
(-1) 		19.1
(0.8) 		17
(-3) 		20.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 20.4
(3)
P 		17
(1.7)
P 		12.5
(0)
P 		4.5
(-3)
A 		14.8
(0.9)
P 		7.8
(-1.8)
A 		16
B 19.2
(1.3)
P 		17.2
(-0.9)
P 		20.2
(2.4)
P 		15.2
(-3)
P 		20.8
(3)
P 		16.1
(-2)
P 		6
C 19.7
(1)
M 		29.2
(3)
P 		1.1
(-3)
A 		10.3
(-1)
P 		10.9
(-0.9)
A 		19.8
(1)
P 		28
avr 19.8
(2.3) 		21.1
(3) 		11.3
(-2.3) 		10
(-3) 		15.5
(-0) 		14.6
(-0.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180802_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15347
Sequence Type Exemplar sequence
Representative Public ID C38C3.2 NCBI
Target Description C38C3.2 /REP_DB=WormBase Gene ID /WP=CE08638 /TR=O17077 /GB=AAB70333.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071033(11), NM_071030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071033 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-28) (sru-28) mRNA, complete cds. 11/11 A 
NM_071030 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-27) (sru-27) mRNA, complete cds. 11/11 A 
GENEFINDER00000040097 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1506124:1507925:1 11/11 None
GENEFINDER00000040100 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1499392:1500579:1 11/11 None
C38C3.2 ENSEMBL cdna:known chromosome:CEL140:V:1499269:1500495:1 gene:C38C3.2 11/11 A 
C38C3.1 ENSEMBL cdna:known chromosome:CEL140:V:1506124:1507925:1 gene:C38C3.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040095 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1499268-1500495(+) 98.91 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sru family
7TM chemoreceptor, sru family
Gene Symbol sru-28
sru-27
Ensembl C38C3.2
C38C3.1
Entrez Gene 183299 Entrez gene
183300 Entrez gene
SwissProt O17080 EMBL-EBI
O17077 EMBL-EBI
WormBase CE33279 Wormbase
CE08638 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70333 Serpentine receptor, class u protein 27 [Caenorhabditis elegans] ref|NP_503431.1| Serpentine Receptor, class U family member (sru-27) [Caenorhabditis elegans] 0.0
blast AAB70332 Serpentine receptor, class u protein 28 [Caenorhabditis elegans] ref|NP_503434.2| Serpentine Receptor, class U family member (sru-28) [Caenorhabditis elegans] 1.0E-162
blast AAB70332 Serpentine receptor, class u protein 28 [Caenorhabditis elegans] ref|NP_503434.2| Serpentine Receptor, class U family member (sru-28) [Caenorhabditis elegans] 1.0E-160
blast AAB70333 Serpentine receptor, class u protein 27 [Caenorhabditis elegans] ref|NP_503431.1| Serpentine Receptor, class U family member (sru-27) [Caenorhabditis elegans] 1.0E-156
blast AAB70333 Serpentine receptor, class u protein 27 [Caenorhabditis elegans] ref|NP_503431.1| Serpentine Receptor, class U family member (sru-27) [Caenorhabditis elegans] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 4.7E-87
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.4E-90
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 4.7E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503434.2 6 34-56,69-91,113-135,155-177,211-233,254-276
NP_503431.1 6 27-49,69-91,111-133,153-175,209-231,252-274
C38C3.2 6 27-49,69-91,111-133,153-175,209-231,252-274
C38C3.1 6 34-56,69-91,113-135,155-177,211-233,254-276
GENEFINDER00000040097 6 34-56,69-91,113-135,155-177,211-233,254-276
GENEFINDER00000040100 5 28-50,70-92,112-134,168-190,211-233
Sequence
Target Sequence 
>C. ELEGANS:180802_S_AT
aatcttttctggttgtcggcaagtttgatcaataactcggttcttctcgtaaagcttgca
catcttaagtctactacagcagcccacacaagatcccaaaagtctcacaaagcagaggtc
tctctcacagtcaccactgtatctatgatttgctcatatctatcaaactccatgattgtg
attgctgctcaacttggaattgaatattcctattacgccattatgcttcgaccttttgga
aatgacctggaaacatgcatggtgtcatgggtattctacttgacgcatccagtttttcga
cgcaagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTTTCTGGTTGTCGGCAAGTT 456 169 649 Antisense
GGTTGTCGGCAAGTTTGATCAATAA 156 509 659 Antisense
TGATCAATAACTCGGTTCTTCTCGT 360 565 674 Antisense
GGTTCTTCTCGTAAAGCTTGCACAT 218 507 687 Antisense
GCTTGCACATCTTAAGTCTACTACA 408 307 702 Antisense
GAATATTCCTATTACGCCATTATGC 484 325 850 Antisense
ATTCCTATTACGCCATTATGCTTCG 194 9 854 Antisense
CATGGTGTCATGGGTATTCTACTTG 385 209 906 Antisense
TGGGTATTCTACTTGACGCATCCAG 118 555 916 Antisense
TTGACGCATCCAGTTTTTCGACGCA 103 705 928 Antisense
GCATCCAGTTTTTCGACGCAAGTCA 207 309 933 Antisense
Sequence Source Affymetrix Proprietary Database