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[180800_at]

Description H13N06.3 /REP_DB=WormBase Gene ID /WP=CE19924 /TR=Q9XTQ5 /GB=CAB17072.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_high_8_8 > 50      6grp_highest_nonorm > 83      6grp_total > 95      4grp_total > 62      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 492.1
(3)
P 		299.3
(-1.7)
M 		322.3
(-1.1)
P 		245.6
(-3)
A 		247
B 517.5
(3)
P 		453.2
(1.3)
P 		394.3
(-0.3)
P 		295.6
(-3)
P 		222
C 592.7
(3)
P 		452.9
(0.5)
P 		558.9
(2.4)
P 		251.2
(-3)
M 		342
avr 534.1
(3) 		401.8
(0.1) 		425.2
(0.6) 		264.1
(-3) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 311.1
(-3)
P 		368
(-1.4)
P 		392.4
(-0.8)
P 		483
(1.7)
P 		530
(3)
P 		442.8
(0.6)
P 		219
B 397.8
(-1.3)
P 		460.2
(-0.1)
P 		312.4
(-3)
P 		620.2
(3)
P 		517.2
(1)
P 		587.6
(2.4)
P 		308
C 604.8
(3)
P 		451
(-0.3)
P 		326.8
(-3)
P 		463.1
(-0.1)
P 		456.6
(-0.2)
P 		457
(-0.2)
P 		278
avr 437.9
(0.2) 		426.4
(-0.2) 		343.9
(-3) 		522.1
(3) 		501.3
(2.3) 		495.8
(2.1) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 179.2
(3)
P 		65
(-1.8)
M 		84.3
(-1)
P 		36
(-3)
A 		143
B 165
(3)
P 		111.9
(-0.1)
P 		91.4
(-1.3)
P 		63
(-3)
P 		102
C 196.2
(3)
P 		130.2
(0.4)
P 		194.8
(2.9)
P 		42.4
(-3)
M 		154
avr 180.1
(3) 		102.4
(-0.5) 		123.5
(0.4) 		47.1
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 57.3
(-3)
P 		130.9
(1.3)
P 		85.5
(-1.4)
P 		122.5
(0.8)
P 		159.9
(3)
P 		107.8
(-0)
P 		103
B 138.4
(-0.4)
P 		153.2
(0.2)
P 		75.9
(-3)
P 		164.3
(0.7)
P 		210.1
(2.6)
P 		219.1
(3)
P 		143
C 224.2
(3)
P 		137.6
(-0.7)
P 		83.2
(-3)
P 		93.1
(-2.6)
P 		147.8
(-0.3)
P 		153
(-0)
P 		141
avr 140
(0.9) 		140.6
(0.9) 		81.5
(-3) 		126.6
(-0) 		172.6
(3) 		160
(2.2) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17824
Sequence Type Exemplar sequence
Representative Public ID H13N06.3 NCBI
Target Description H13N06.3 /REP_DB=WormBase Gene ID /WP=CE19924 /TR=Q9XTQ5 /GB=CAB17072.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078158(11), NM_078159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078158 NCBI Caenorhabditis elegans Gut OBstructed or defective family member (gob-1) (gob-1) mRNA, complete cds. 11/11 None
NM_078159 NCBI Caenorhabditis elegans Gut OBstructed or defective family member (gob-1) (gob-1) mRNA, complete cds. 11/11 None
GENEFINDER00000006584 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15493321:15496861:1 11/11 None
SNAP00000006578 ENSEMBL cdna:SNAP chromosome:CEL140:X:15494364:15496861:1 11/11 None
H13N06.3a ENSEMBL cdna:known chromosome:CEL140:X:15493454:15497387:1 gene:H13N06.3 11/11 None
H13N06.3b ENSEMBL cdna:known chromosome:CEL140:X:15493548:15496861:1 gene:H13N06.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15493453-15496861(+) 100.0 100.0
Public Domain and Genome References
Ensembl H13N06.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB17072 Hypothetical protein H13N06.3a [Caenorhabditis elegans] ref|NP_510559.1| Gut OBstructed or defective family member (gob-1) [Caenorhabditis elegans] 0.0
blast CAC70091 Hypothetical protein H13N06.3b [Caenorhabditis elegans] ref|NP_510560.1| Gut OBstructed or defective family member (gob-1) [Caenorhabditis elegans] 0.0
blast CAE63321 Hypothetical protein CBG07712 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180800_AT
ggacgcgaatggtggcttggcggccgacgaatagtgcatgatgatggaattcctgaggaa
ggaagtgttgcaattgggcagctctgtgaacaactggatgagatacttcatgaaggggaa
tttgtgcaattcgcgttggttggaagtggtgtacagaggaaagtcgatcgtcttacccta
ggagttcaaacggttttcaagcaagttccagaagacctctcagctagatacattgatgca
gttcgtgaacgaatccatcgagttgatcccaacagtcaatatttagtattagaaaattgt
tcaccgttagaaattgaagtatgcgttcattcgtcaggagctgtttggaacaagggagat
ggagttgctgctttagtggaatcactccacgactcgttgaaggttggaaaagtttgtgtc
gcaggggacaccgcgagtgatgttccgatgttgaaaaaagcagcagacgagaatccagag
aacgttcgagccttgtttgtcaatatcaacaagcagcttcaagagaacatcacaaatatt
gttggagacgccaaacgagtctgcttcatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGCGAATGGTGGCTTGGCGGCC 215 497 790 Antisense
GCTTGGCGGCCGACGAATAGTGCAT 257 307 804 Antisense
TCGATCGTCTTACCCTAGGAGTTCA 489 599 953 Antisense
GAAGACCTCTCAGCTAGATACATTG 546 339 1000 Antisense
GAACGAATCCATCGAGTTGATCCCA 185 347 1036 Antisense
AGTATGCGTTCATTCGTCAGGAGCT 322 63 1107 Antisense
GGAGTTGCTGCTTTAGTGGAATCAC 693 517 1150 Antisense
GAATCACTCCACGACTCGTTGAAGG 325 327 1168 Antisense
CACCGCGAGTGATGTTCCGATGTTG 231 201 1218 Antisense
GAACGTTCGAGCCTTGTTTGTCAAT 67 349 1269 Antisense
ACGCCAAACGAGTCTGCTTCATCTC 369 91 1337 Antisense
Sequence Source Affymetrix Proprietary Database