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[180799_at]

Description C55C3.1 /REP_DB=WormBase Gene ID /WP=CE06988 /TR=Q18869 /GB=AAA96173.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      6grp_highest_nonorm > 90      6grp_total > 83      4grp_total > 52      6grp_highest_sub > 05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 101
(1.4)
P 		83
(-0.3)
P 		119.2
(3)
P 		52.4
(-3)
A 		67
B 79.4
(-1.6)
P 		105.6
(3)
P 		71.3
(-3)
P 		82.4
(-1.1)
A 		34
C 122.9
(2.4)
P 		126.4
(3)
P 		105.3
(-0.6)
P 		91.6
(-3)
A 		35
avr 101.1
(2.2) 		105
(3) 		98.6
(1.7) 		75.5
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 94.3
(-3)
P 		95.3
(-2.9)
P 		121
(-0.6)
P 		156.9
(2.7)
P 		160.4
(3)
P 		98.9
(-2.6)
P 		66
B 76.6
(-2.8)
P 		101.5
(-1.2)
P 		140.4
(1.5)
P 		125.2
(0.4)
P 		163.4
(3)
P 		74.3
(-3)
P 		89
C 60.9
(-3)
P 		111.1
(-0.2)
P 		109.6
(-0.3)
P 		142.6
(1.6)
P 		168.5
(3)
P 		77.3
(-2.1)
P 		108
avr 77.3
(-3) 		102.6
(-1.3) 		123.7
(0.2) 		141.6
(1.4) 		164.1
(3) 		83.5
(-2.6) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 36.8
(3)
P 		18
(-0.9)
P 		31.2
(1.8)
P 		7.7
(-3)
A 		29
B 25.3
(2.5)
P 		26.1
(3)
P 		16.5
(-3)
P 		17.6
(-2.3)
A 		10
C 40.7
(3)
P 		36.3
(2)
P 		36.7
(2.1)
P 		15.4
(-3)
A 		25
avr 34.3
(3) 		26.8
(0.8) 		28.1
(1.2) 		13.6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 17.4
(-3)
P 		33.9
(0.2)
P 		26.4
(-1.3)
P 		39.8
(1.3)
P 		48.4
(3)
P 		24.1
(-1.7)
P 		31
B 26.7
(-3)
P 		33.8
(-1.9)
P 		34.1
(-1.9)
P 		33.2
(-2)
P 		66.4
(3)
P 		27.7
(-2.8)
P 		40
C 22.6
(-3)
P 		33.9
(-0.9)
P 		27.9
(-2)
P 		28.7
(-1.9)
P 		54.5
(3)
P 		25.9
(-2.4)
P 		32
avr 22.2
(-3) 		33.9
(-0.9) 		29.5
(-1.7) 		33.9
(-0.9) 		56.4
(3) 		25.9
(-2.4) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10839
Sequence Type Exemplar sequence
Representative Public ID C55C3.1 NCBI
Target Description C55C3.1 /REP_DB=WormBase Gene ID /WP=CE06988 /TR=Q18869 /GB=AAA96173.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068449 NCBI Caenorhabditis elegans C55C3.1 (C55C3.1) mRNA, complete cds. 11/11 None
SNAP00000018118 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5709089:5714321:1 11/11 None
C55C3.1 ENSEMBL cdna:known chromosome:CEL140:IV:5709089:5714321:1 gene:C55C3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018119 8/11 Cross Hyb Matching Probes None
GENEFINDER00000018122 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5709094-5714327(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55C3.1
Entrez Gene 183851 Entrez gene
SwissProt Q18869 EMBL-EBI
WormBase CE06988 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500850 C55C3.1 [Caenorhabditis elegans] gb|AAA96173.1| Hypothetical protein C55C3.1 [Caenorhabditis elegans] 0.0
blast CAE72663 Hypothetical protein CBG19877 [Caenorhabditis briggsae] 0.0
blast CAB02898 Hypothetical protein F01G10.10 [Caenorhabditis elegans] ref|NP_501879.2| F01G10.10 [Caenorhabditis elegans] 5.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 3.5E-113
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500850.1 1 9-28
C55C3.1 1 9-28
SNAP00000018118 1 9-28
Sequence
Target Sequence 
>C. ELEGANS:180799_AT
atccgaactctactgttgagctggcaatgagtgccacaagagctccggcagtgcttttca
gtgaaaaaaatggaggaacgatttccgtttcacttggaggtttagttgtggtctttgctg
taaacggaaaccagcgtcgacaggttattgtggtagatttggatgtagttgcagatgcaa
gactgtccattcaggggcacaacgtgagtggttctgtggagcttcggaagtttgatctaa
agcgtcgaacgggaacagttgatatttctgatgctgaaattgatgatattgctcttttag
tcagtcagttgtctgaaaaccttctcaatgggctattggtcaatggtatgcctattccac
ttcctcatgtgcttcgaatcaaggacagtcacattaatgttctgagccgacgaatgcata
ttcaagttgatgtggatgttgatgagaggaggctatcaaaattggcatctcaaacatttt
tcaagactccacagttttcagatgtcaatctcagcccactccgacgcatggtccgtcccg
ttccattcctggaggcccgccaacaaatttctcagttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGAACTCTACTGTTGAGCTGGC 493 37 1208 Antisense
GGAGGAACGATTTCCGTTTCACTTG 655 513 1279 Antisense
GAGGTTTAGTTGTGGTCTTTGCTGT 99 403 1304 Antisense
GATGCAAGACTGTCCATTCAGGGGC 432 409 1381 Antisense
TGAGTGGTTCTGTGGAGCTTCGGAA 311 567 1412 Antisense
GATATTGCTCTTTTAGTCAGTCAGT 419 427 1492 Antisense
GTCAGTTGTCTGAAAACCTTCTCAA 346 467 1511 Antisense
CAATGGTATGCCTATTCCACTTCCT 259 183 1548 Antisense
ACTTCCTCATGTGCTTCGAATCAAG 40 105 1566 Antisense
TTTCAGATGTCAATCTCAGCCCACT 370 669 1703 Antisense
GCCCGCCAACAAATTTCTCAGTTTA 223 283 1762 Antisense
Sequence Source Affymetrix Proprietary Database