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[180797_s_at]

Description F11D11.3 /REP_DB=WormBase Gene ID /WP=CE15794 /TR=O62153 /GB=CAB04096.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 04      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 10.7
(-2.6)
A 		4.9
(-3)
A 		4.1
(-3)
A 		106.7
(3)
A 		103
B 42.9
(3)
A 		5.9
(-2.6)
A 		3.1
(-3)
A 		30.9
(1.2)
A 		40
C 8.9
(-2.7)
A 		3
(-3)
A 		6.6
(-2.8)
A 		124.8
(3)
P 		122
avr 20.8
(-1.8) 		4.6
(-3) 		4.6
(-3) 		87.5
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.5
(3)
A 		2.9
(-3)
A 		9
(0.8)
A 		4.7
(-1.9)
A 		3.7
(-2.5)
A 		3.7
(-2.5)
A 		10
B 4.1
(0.4)
A 		4.6
(1.5)
A 		5.3
(3)
A 		4.7
(1.7)
A 		3.2
(-1.5)
A 		2.5
(-3)
A 		3
C 23.6
(3)
A 		19.2
(1.7)
A 		3.2
(-3)
A 		4.2
(-2.7)
A 		3.4
(-2.9)
A 		5.9
(-2.2)
A 		20
avr 13.4
(3) 		8.9
(0.3) 		5.8
(-1.6) 		4.5
(-2.3) 		3.4
(-3) 		4
(-2.6) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.9
(-1.8)
A 		1.1
(-3)
A 		1.1
(-3)
A 		15.6
(3)
A 		15
B 13.7
(3)
A 		1.4
(-2.7)
A 		0.7
(-3)
A 		6.6
(-0.3)
A 		13
C 2.9
(-2.4)
A 		0.9
(-3)
A 		2.3
(-2.6)
A 		21
(3)
P 		20
avr 6.8
(-0.4) 		1.1
(-3) 		1.4
(-2.9) 		14.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.3
(3)
A 		1
(-2.6)
A 		1.9
(1.3)
A 		1.2
(-1.7)
A 		1.1
(-2.1)
A 		0.9
(-3)
A 		1
B 1.4
(2)
A 		1.5
(3)
A 		1.3
(1)
A 		1.2
(-0)
A 		1.3
(1)
A 		0.9
(-3)
A 		1
C 8.8
(3)
A 		5.9
(0.8)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		2
(-2.1)
A 		8
avr 4.2
(3) 		2.8
(0.3) 		1.3
(-2.6) 		1.1
(-3) 		1.2
(-2.8) 		1.3
(-2.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180797_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13366
Sequence Type Exemplar sequence
Representative Public ID F11D11.3 NCBI
Target Description F11D11.3 /REP_DB=WormBase Gene ID /WP=CE15794 /TR=O62153 /GB=CAB04096.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075261(11), NM_075262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075261 NCBI Caenorhabditis elegans F11D11.3 (F11D11.3) mRNA, complete cds. 11/11 None
NM_075262 NCBI Caenorhabditis elegans F11D11.4 (F11D11.4) mRNA, complete cds. 11/11 A 
SNAP00000039940 ENSEMBL cdna:SNAP chromosome:CEL140:V:18760556:18762843:-1 11/11 None
GENEFINDER00000039950 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18760296:18763436:-1 10/11 None
GENEFINDER00000039951 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18764108:18768696:1 10/11 None
F11D11.3 ENSEMBL cdna:known chromosome:CEL140:V:18760556:18762843:-1 gene:F11D11.3 11/11 None
F11D11.4 ENSEMBL cdna:known chromosome:CEL140:V:18763952:18766100:1 gene:F11D11.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039941 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18764760-18766100(+) 46.08 46.08
chrV:18760555-18762843(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F11D11.3
F11D11.4
Entrez Gene 184350 Entrez gene
184351 Entrez gene
SwissProt O62153 EMBL-EBI
O62152 EMBL-EBI
WormBase CE15794 Wormbase
CE15795 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04096 Hypothetical protein F11D11.3 [Caenorhabditis elegans] ref|NP_507662.1| F11D11.3 [Caenorhabditis elegans] 0.0
blast T20776 hypothetical protein F11D11.2 - Caenorhabditis elegans 0.0
blast CAB04096 Hypothetical protein F11D11.3 [Caenorhabditis elegans] ref|NP_507662.1| F11D11.3 [Caenorhabditis elegans] 1.0E-173
blast AAK68401 Hypothetical protein W07E6.6 [Caenorhabditis elegans] gb|AAC46711.1| Hypothetical protein R10H1.3 [Caenorhabditis elegans] 1.0E-152
blast H89382 protein ZK218.2 [imported] - Caenorhabditis elegans 1.0E-152
blast CAB04095 Hypothetical protein F11D11.4 [Caenorhabditis elegans] ref|NP_507663.1| F11D11.4 [Caenorhabditis elegans] 1.0E-114
blast AAG45577 Hypothetical protein ZK6.11a [Caenorhabditis elegans] ref|NP_001024314.1| ZK6.11a [Caenorhabditis elegans] 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 6.4E-86
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 2.0E-72
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 7.7E-46
Sequence
Target Sequence 
>C. ELEGANS:180797_S_AT
taatggatcttggacccgtgacgtcacctcaaccggattttatatgaaaccccttggcag
tgctgataacactacaattgttaacattaagagagacaccaaacataccggattttctgg
tgcaaatgttgtcgggaatctcccaaatggaggatcggttactgtaggcttttatggcga
cggcacaaagtatgaacgcactgtcacaccgaatacctctatcacttcatggaccattcc
atatattgaacgaacttttcaagtttcgtccactaacggaaaagatggagagtactatgt
gcaatatttcgtgtctgaaggatcgttgaacggatcaatagtcacgacaacatcaccccc
accatcaacgacttcaaaatttaggattgaagcgacaacgacttccaaatttaggattga
agcgacaactagatccaccggacttgttcgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGGATCTTGGACCCGTGACGTC 325 633 705 Antisense
ACGTCACCTCAACCGGATTTTATAT 476 89 725 Antisense
TATGAAACCCCTTGGCAGTGCTGAT 604 655 747 Antisense
GACACCAAACATACCGGATTTTCTG 42 367 799 Antisense
GCAAATGTTGTCGGGAATCTCCCAA 692 317 826 Antisense
ATGGAGGATCGGTTACTGTAGGCTT 125 53 851 Antisense
CAAAGTATGAACGCACTGTCACACC 245 193 890 Antisense
CTCTATCACTTCATGGACCATTCCA 446 229 921 Antisense
TCAATAGTCACGACAACATCACCCC 569 633 1039 Antisense
TGAAGCGACAACTAGATCCACCGGA 331 573 1122 Antisense
TAGATCCACCGGACTTGTTCGATTT 694 651 1134 Antisense
Sequence Source Affymetrix Proprietary Database