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[180796_at]

Description D2063.2 /REP_DB=WormBase Gene ID /WP=CE20629 /TR=Q9UAT2 /GB=AAD14691.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 8
(-3)
A 		19.8
(-0.9)
A 		41.3
(3)
A 		13.2
(-2.1)
A 		33
B 24.5
(3)
A 		14.3
(-0.8)
A 		8.4
(-3)
A 		11.4
(-1.9)
A 		16
C 26.5
(0.8)
A 		12.9
(-3)
A 		34.4
(3)
A 		13.3
(-2.9)
A 		22
avr 19.7
(-0.2) 		15.7
(-1.8) 		28
(3) 		12.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 25.6
(3)
A 		6.8
(-2)
A 		9
(-1.4)
A 		3.1
(-3)
A 		19.1
(1.3)
A 		12.6
(-0.5)
A 		23
B 30
(3)
A 		10.3
(-1.5)
A 		7.7
(-2.1)
A 		15.3
(-0.4)
A 		13.1
(-0.9)
A 		3.8
(-3)
A 		26
C 7.8
(-2)
A 		8.4
(-1.8)
A 		8.7
(-1.7)
A 		14.7
(0.3)
A 		22.5
(3)
A 		4.9
(-3)
A 		18
avr 21.1
(3) 		8.5
(-2.4) 		8.5
(-2.4) 		11
(-1.3) 		18.2
(1.8) 		7.1
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.9
(-2.3)
A 		4.3
(-1.4)
A 		10.8
(3)
A 		1.9
(-3)
A 		9
B 7.8
(3)
A 		3.5
(-1.4)
A 		2
(-3)
A 		2.4
(-2.6)
A 		6
C 8.8
(1)
A 		3.7
(-2.1)
A 		12
(3)
A 		2.2
(-3)
A 		10
avr 6.5
(1.2) 		3.8
(-1.4) 		8.3
(3) 		2.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.7
(1.7)
A 		2.4
(-1.1)
A 		2
(-1.6)
A 		0.8
(-3)
A 		5.8
(3)
A 		3.1
(-0.2)
A 		5
B 10.4
(3)
A 		3.4
(-1.7)
A 		1.9
(-2.7)
A 		4
(-1.3)
A 		5.3
(-0.4)
A 		1.4
(-3)
A 		9
C 2.9
(-1.7)
A 		2.6
(-2)
A 		2.2
(-2.5)
A 		3
(-1.6)
A 		7.3
(3)
A 		1.7
(-3)
A 		6
avr 6
(2.9) 		2.8
(-1.8) 		2
(-3) 		2.6
(-2.1) 		6.1
(3) 		2.1
(-2.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15022
Sequence Type Exemplar sequence
Representative Public ID D2063.2 NCBI
Target Description D2063.2 /REP_DB=WormBase Gene ID /WP=CE20629 /TR=Q9UAT2 /GB=AAD14691.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071795 NCBI Caenorhabditis elegans D2063.2 (D2063.2) mRNA, complete cds. 11/11 None
SNAP00000042160 ENSEMBL cdna:SNAP chromosome:CEL140:V:4328853:4332364:-1 11/11 None
D2063.2 ENSEMBL cdna:known chromosome:CEL140:V:4328853:4332364:-1 gene:D2063.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042164 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4328852-4332364(-) 99.84 100.0
Public Domain and Genome References
Gene Title
Ensembl D2063.2
Entrez Gene 183958 Entrez gene
SwissProt Q9UAT2 EMBL-EBI
WormBase CE20629 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504196 D2063.2 [Caenorhabditis elegans] gb|AAD14691.1| Hypothetical protein D2063.2 [Caenorhabditis elegans] 0.0
blast AAC48045 Hypothetical protein K09E10.2 [Caenorhabditis elegans] ref|NP_502345.1| K09E10.2 [Caenorhabditis elegans] 0.0
blast AAC48044 Hypothetical protein K09E10.1 [Caenorhabditis elegans] ref|NP_502344.1| K09E10.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504196.1 9 12-29,39-56,81-103,141-163,170-187,229-251,272-291,301-323,330-349
D2063.2 9 12-29,39-56,81-103,141-163,170-187,229-251,272-291,301-323,330-349
SNAP00000042160 9 12-29,39-56,81-103,141-163,170-187,229-251,272-291,301-323,330-349
Sequence
Target Sequence 
>C. ELEGANS:180796_AT
gctgtgaacctttggcagctcgtcaagatgacaaaaattgcatggataagcttacgcagt
ttgtggaattcatagaaagtgcaaaaccggattatgcatttatgtttactagatacttct
caatagctgatgcatttgagaacaaaaccgatccagatttgaagaatgaccgaattttct
gtcaaatgaaaagtcagcttaatgagcttcttccaaatatcaaaaagaagctgtacatcc
tcgactcaatgccacttgtcaacgctccttacattccaaaaattgcagaggacttgagaa
atgggaaatcgattcaggagattagtaaatccctcctgccatctgacaactacaaaaacg
gacgactgcggcacgcggctctagtgaaggaatgcggtcggaaatgtgaactgatcgatt
atctaccattgttttttaataagatcacaaacatgtatcagtacgttgattcacgtggtt
tttcatatttcaccacactttatcacctatctgctcatggcatcgaacttgtacgaccaa
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGAACCTTTGGCAGCTCGTCA 125 295 1373 Antisense
AAAAGAAGCTGTACATCCTCGACTC 10 133 1595 Antisense
CAACGCTCCTTACATTCCAAAAATT 438 185 1632 Antisense
GGAGATTAGTAAATCCCTCCTGCCA 540 517 1689 Antisense
CTCCTGCCATCTGACAACTACAAAA 632 233 1705 Antisense
ACAAAAACGGACGACTGCGGCACGC 279 109 1724 Antisense
CGGCACGCGGCTCTAGTGAAGGAAT 167 243 1741 Antisense
GATCGATTATCTACCATTGTTTTTT 669 417 1785 Antisense
CATATTTCACCACACTTTATCACCT 28 215 1856 Antisense
TTTATCACCTATCTGCTCATGGCAT 464 673 1871 Antisense
ATGGCATCGAACTTGTACGACCAAT 191 53 1889 Antisense
Sequence Source Affymetrix Proprietary Database