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[180795_at]

Description Y61B8B.2 /REP_DB=WormBase Gene ID /WP=CE16669 /TR=O45968 /GB=CAA16429.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 45      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 14.2
(3)
A 		11.8
(1.2)
A 		7
(-2.3)
A 		6
(-3)
A 		8
B 9.9
(0.9)
A 		6.6
(-3)
A 		11.7
(3)
A 		8.3
(-1)
A 		5
C 14.3
(3)
A 		13.2
(2.3)
A 		4.5
(-3)
A 		10.6
(0.7)
A 		10
avr 12.8
(3) 		10.5
(0.3) 		7.7
(-3) 		8.3
(-2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 16.4
(3)
A 		8.8
(-0.9)
A 		9
(-0.8)
A 		4.8
(-3)
A 		10.9
(0.2)
A 		7.8
(-1.4)
A 		12
B 7.5
(-1.4)
A 		7.6
(-1.3)
A 		11
(2.8)
A 		11.2
(3)
A 		8.4
(-0.4)
A 		6.2
(-3)
A 		5
C 12.1
(1.1)
A 		16.4
(3)
A 		9.5
(-0)
A 		9.6
(0)
A 		2.9
(-3)
A 		2.8
(-3)
A 		14
avr 12
(3) 		10.9
(2) 		9.8
(0.9) 		8.5
(-0.3) 		7.4
(-1.3) 		5.6
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 5.2
(3)
A 		2.6
(-0.6)
A 		1.8
(-1.7)
A 		0.9
(-3)
A 		4
B 3.2
(3)
A 		1.6
(-3)
A 		2.7
(1.1)
A 		1.8
(-2.3)
A 		2
C 4.7
(3)
A 		3.8
(1.3)
A 		1.6
(-3)
A 		1.8
(-2.6)
A 		3
avr 4.4
(3) 		2.7
(-0.5) 		2
(-2) 		1.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3
(2.1)
A 		3.1
(2.4)
A 		2
(-0.7)
A 		1.2
(-3)
A 		3.3
(3)
A 		1.9
(-1)
A 		2
B 2.6
(-1.4)
A 		2.5
(-1.9)
A 		2.7
(-0.8)
A 		3
(0.8)
A 		3.4
(3)
A 		2.3
(-3)
A 		1
C 4.5
(2.3)
A 		5
(3)
A 		2.4
(-0.8)
A 		1.9
(-1.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		4
avr 3.4
(2.7) 		3.5
(3) 		2.4
(-0.7) 		2
(-2) 		2.5
(-0.3) 		1.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13356
Sequence Type Exemplar sequence
Representative Public ID Y61B8B.2 NCBI
Target Description Y61B8B.2 /REP_DB=WormBase Gene ID /WP=CE16669 /TR=O45968 /GB=CAA16429.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074980
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018272 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17308359:17310495:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074980 6/11 Cross Hyb Matching Probes None
SNAP00000018268 6/11 Cross Hyb Matching Probes None
SNAP00000019851 2/11 Cross Hyb Matching Probes None
Y61B8B.2 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17308364-17309837(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16429 Hypothetical protein Y61B8B.2 [Caenorhabditis elegans] ref|NP_507381.2| Y61B8B.2 [Caenorhabditis elegans] 1.0E-149
blast AAD14740 Hypothetical protein Y40B10B.1 [Caenorhabditis elegans] ref|NP_503538.1| Y40B10B.1 [Caenorhabditis elegans] 2.0E-63
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 3.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 9.4E-108
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 5.1E-24
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 4.2E-36
Sequence
Target Sequence 
>C. ELEGANS:180795_AT
acgagttcacattcattctccacatgtcaacacccttggtgaatggcatccgtgggcaag
gtgtggtgatggaaagtatgcacacggtatacagatcaagtacgaacaggatcgagaagg
cgccgataacactgctctcaacgccgtcgtcttgtatcaacaaaacgaatcgggtgatgg
agaaggagcatttggcagttggcaatctatcagagcttgtccaatcgggacagttataat
tggattcgcactccgttctgaaccatatcagggacatagaaaagatagtcttggtgctgt
taatttcaaggcacactgcggcactttgaatggaccaaggaatgttacggactctattca
aggagactcatctagcaatggcaattggagttccgatcagttctgtccagaaaactacgt
ggtctgtggaatccaaagtcaaatacagtggcctaacagtggtactgatggggagaacac
tgcactgaacaacataaacttggaatgctgccaagttcccggtacatgtgtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGTTCACATTCATTCTCCACAT 686 93 588 Antisense
TCCACATGTCAACACCCTTGGTGAA 233 589 606 Antisense
GAATGGCATCCGTGGGCAAGGTGTG 598 331 628 Antisense
CGAGAAGGCGCCGATAACACTGCTC 272 251 700 Antisense
ACGCCGTCGTCTTGTATCAACAAAA 378 91 728 Antisense
AATCTATCAGAGCTTGTCCAATCGG 600 169 791 Antisense
ATAATTGGATTCGCACTCCGTTCTG 489 25 823 Antisense
CAAGGCACACTGCGGCACTTTGAAT 430 183 894 Antisense
GAGTTCCGATCAGTTCTGTCCAGAA 612 397 975 Antisense
GGGGAGAACACTGCACTGAACAACA 419 497 1057 Antisense
GCCAAGTTCCCGGTACATGTGTGCC 675 277 1097 Antisense
Sequence Source Affymetrix Proprietary Database