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[180794_at]

Description K06H6.3 /REP_DB=WormBase Gene ID /WP=CE11832 /TR=O17106 /GB=AAB70363.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 7.1
(-1.1)
A 		3.1
(-3)
A 		15.9
(3)
A 		5.6
(-1.8)
A 		13
B 27.9
(3)
A 		6.9
(-3)
A 		9.2
(-2.3)
A 		12.9
(-1.3)
A 		21
C 32.1
(0.4)
A 		6.2
(-2.6)
A 		3.1
(-3)
A 		54.7
(3)
A 		52
avr 22.4
(2.4) 		5.4
(-3) 		9.4
(-1.7) 		24.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 5.6
(3)
A 		4.4
(0.6)
A 		2.6
(-3)
A 		3
(-2.2)
A 		4.8
(1.4)
A 		4
(-0.2)
A 		3
B 8
(3)
A 		7.1
(2.2)
A 		6.2
(1.3)
A 		2.1
(-2.4)
A 		4.8
(0)
A 		1.5
(-3)
A 		7
C 7.9
(-2)
A 		36.6
(3)
A 		2
(-3)
A 		4.9
(-2.5)
A 		7
(-2.1)
A 		2.7
(-2.9)
A 		35
avr 7.2
(-1) 		16
(3) 		3.6
(-2.6) 		3.3
(-2.7) 		5.5
(-1.7) 		2.7
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.6
(0.3)
A 		0.7
(-3)
A 		4.2
(3)
A 		0.8
(-2.8)
A 		4
B 8.9
(3)
A 		1.7
(-3)
A 		2.1
(-2.7)
A 		2.8
(-2.1)
A 		7
C 10.6
(3)
A 		1.8
(-2.6)
A 		1.1
(-3)
A 		9.2
(2.1)
A 		10
avr 7.4
(3) 		1.4
(-3) 		2.5
(-1.9) 		4.3
(-0.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1
(-0.6)
A 		1.6
(3)
A 		0.6
(-3)
A 		0.8
(-1.8)
A 		1.4
(1.8)
A 		1
(-0.6)
A 		1
B 2.8
(3)
A 		2.4
(2)
A 		1.5
(-0.4)
A 		0.6
(-2.7)
A 		1.9
(0.7)
A 		0.5
(-3)
A 		2
C 2.9
(-1.7)
A 		11.2
(3)
A 		0.5
(-3)
A 		1
(-2.7)
A 		2.3
(-2)
A 		0.9
(-2.8)
A 		11
avr 2.2
(-1) 		5.1
(3) 		0.9
(-2.9) 		0.8
(-3) 		1.9
(-1.5) 		0.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15126
Sequence Type Exemplar sequence
Representative Public ID K06H6.3 NCBI
Target Description K06H6.3 /REP_DB=WormBase Gene ID /WP=CE11832 /TR=O17106 /GB=AAB70363.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070851 NCBI Caenorhabditis elegans K06H6.3 (K06H6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000003561 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:581745:583260:1 11/11 None
K06H6.3 ENSEMBL cdna:known chromosome:CEL140:V:581745:583260:1 gene:K06H6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003552 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:581744-583260(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H6.3
Entrez Gene 187072 Entrez gene
SwissProt O17106 EMBL-EBI
WormBase CE11832 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
15780 nucleotide-sugar transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
139 Golgi membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5338 nucleotide-sugar transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70363 Hypothetical protein K06H6.3 [Caenorhabditis elegans] ref|NP_503252.1| K06H6.3 [Caenorhabditis elegans] 1.0E-161
blast AAB70363 Hypothetical protein K06H6.3 [Caenorhabditis elegans] ref|NP_503252.1| K06H6.3 [Caenorhabditis elegans] 1.0E-155
blast AAC02568 Hypothetical protein B0212.4a [Caenorhabditis elegans] ref|NP_741360.1| B0212.4a [Caenorhabditis elegans] 1.0E-101
blast AAB65894 Hypothetical protein F44C8.7 [Caenorhabditis elegans] ref|NP_503604.2| F44C8.7 [Caenorhabditis elegans] gb|AAK49910.1| F44C8.7-like protein [Caenorhabditis elegans] 1.0E-101
blast AAC02568 Hypothetical protein B0212.4a [Caenorhabditis elegans] ref|NP_741360.1| B0212.4a [Caenorhabditis elegans] 1.0E-97
blast AAB65894 Hypothetical protein F44C8.7 [Caenorhabditis elegans] ref|NP_503604.2| F44C8.7 [Caenorhabditis elegans] gb|AAK49910.1| F44C8.7-like protein [Caenorhabditis elegans] 1.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 2.1E-72
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 4.6E-39
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 1.4E-72
Pfam IPR007271 EMBL-EBI Nucleotide-sugar transporter 4.6E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503252.1 7 29-51,66-88,109-128,138-155,189-211,216-238,269-291
K06H6.3 7 29-51,66-88,109-128,138-155,189-211,216-238,269-291
GENEFINDER00000003561 7 29-51,61-83,122-144,159-176,189-211,215-237,267-289
Sequence
Target Sequence 
>C. ELEGANS:180794_AT
cgtaactctccaactgcgaattttaaccactgcaattttatctgttgttctactgagcaa
aaagttatccggttatcagtggatggcacagggtatggctcttattggggaacttttttt
aaaatataagcttgacaactccaattctcgtcgggaaattgctggaaatttttggctggg
gctagcgtctgttcttggcatgtgctggacgagcgcatttgccggaaacatttttcacgg
ctggacatggatagtatggcttgtcacgataggtaactcaatcggagggctttgcatatc
gctggtaatgaagtacgcggataatgtaatgaaaacatattgtcaatcactggctatagg
cttcacctcaatcgtgtccatttgccttggcgatcgattgctaagtttatatcttggtta
tggagttttccttgtcacatcgtcagttgtagtgtactcactctatcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTAACTCTCCAACTGCGAATTTTA 327 247 420 Antisense
GGATGGCACAGGGTATGGCTCTTAT 207 515 500 Antisense
TGACAACTCCAATTCTCGTCGGGAA 659 571 552 Antisense
TAGCGTCTGTTCTTGGCATGTGCTG 547 651 602 Antisense
GCATGTGCTGGACGAGCGCATTTGC 625 309 617 Antisense
GAGGGCTTTGCATATCGCTGGTAAT 25 403 704 Antisense
AATCACTGGCTATAGGCTTCACCTC 443 171 764 Antisense
TTCACCTCAATCGTGTCCATTTGCC 116 687 781 Antisense
ATTTGCCTTGGCGATCGATTGCTAA 501 17 799 Antisense
TTTCCTTGTCACATCGTCAGTTGTA 617 669 846 Antisense
GTTGTAGTGTACTCACTCTATCCCG 558 437 865 Antisense
Sequence Source Affymetrix Proprietary Database