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[180793_at]

Description K09B11.2 /REP_DB=WormBase Gene ID /WP=CE19989 /TR=Q9U3B6 /GB=CAB63234.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 69      6grp_total > 59      4grp_total > 55      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 287.6
(3)
P 		227.1
(-1.4)
A 		204.4
(-3)
P 		209.7
(-2.6)
P 		83
B 300.5
(1.7)
P 		286.2
(0.8)
M 		321.8
(3)
P 		226.2
(-3)
P 		96
C 283.4
(1.9)
P 		175.2
(-3)
A 		244.7
(0.2)
P 		306.6
(3)
P 		131
avr 290.5
(3) 		229.5
(-3) 		257
(-0.3) 		247.5
(-1.2) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 277.5
(2.9)
P 		253.5
(1.7)
P 		161.6
(-3)
P 		192.5
(-1.4)
P 		209.2
(-0.6)
P 		278.8
(3)
P 		117
B 220.3
(-0.4)
P 		217.4
(-0.5)
P 		155.7
(-3)
A 		179.4
(-2)
P 		253.8
(1)
P 		302.1
(3)
P 		146
C 223.7
(0.3)
P 		205
(-0.5)
P 		144.7
(-3)
A 		237.4
(0.8)
P 		239.7
(0.9)
P 		290.5
(3)
P 		146
avr 240.5
(0.8) 		225.3
(0.1) 		154
(-3) 		203.1
(-0.8) 		234.2
(0.5) 		290.5
(3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 104.7
(3)
P 		49.3
(-1.5)
A 		53.4
(-1.2)
P 		30.7
(-3)
P 		74
B 95.8
(3)
P 		70.7
(-0.2)
M 		74.6
(0.3)
P 		48.2
(-3)
P 		48
C 93.8
(3)
P 		50.4
(-3)
A 		85.3
(1.8)
P 		51.7
(-2.8)
P 		43
avr 98.1
(3) 		56.8
(-1.5) 		71.1
(0) 		43.5
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 51.2
(-1.3)
P 		90.2
(3)
P 		35.2
(-3)
P 		48.8
(-1.5)
P 		63.1
(0)
P 		67.9
(0.6)
P 		55
B 76.6
(0.1)
P 		72.4
(-0.2)
P 		37.8
(-3)
A 		47.5
(-2.2)
P 		103.1
(2.2)
P 		112.6
(3)
P 		75
C 82.9
(1.6)
P 		62.6
(-0.4)
P 		36.8
(-3)
A 		47.7
(-1.9)
P 		77.5
(1)
P 		97.2
(3)
P 		60
avr 70.2
(0.6) 		75.1
(1.1) 		36.6
(-3) 		48
(-1.8) 		81.2
(1.8) 		92.6
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180793_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8738
Sequence Type Exemplar sequence
Representative Public ID K09B11.2 NCBI
Target Description K09B11.2 /REP_DB=WormBase Gene ID /WP=CE19989 /TR=Q9U3B6 /GB=CAB63234.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070187 NCBI Caenorhabditis elegans K09B11.2 (K09B11.2) mRNA, complete cds. 11/11 None
SNAP00000037689 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13416766:13429251:1 11/11 None
GENEFINDER00000037714 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13422471:13429251:1 11/11 None
K09B11.2 ENSEMBL cdna:known chromosome:CEL140:IV:13422469:13429315:1 gene:K09B11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13422476-13429257(+) 99.7 100.0
Public Domain and Genome References
Gene Title
Ensembl K09B11.2
Entrez Gene 187190 Entrez gene
SwissProt Q9U3B6 EMBL-EBI
WormBase CE19989 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63234 Hypothetical protein K09B11.2 [Caenorhabditis elegans] ref|NP_502588.1| K09B11.2 [Caenorhabditis elegans] 0.0
blast CAE58602 Hypothetical protein CBG01769 [Caenorhabditis briggsae] 0.0
blast CAB05550 Hypothetical protein K09B11.1 [Caenorhabditis elegans] ref|NP_502587.2| Pelle/IL-1 receptor associated Kinase (IRAK) family member (pik-1) [Caenorhabditis elegans] gb|AAK37545.1| Pelle IRAK-like kinase 1 [Caenorhabditis elegans] 0.0
blast BAE34079.1 unnamed protein product [Mus musculus] 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000488 EMBL-EBI Death domain 1.9E-6
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-49
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000037714 1 156-178
Sequence
Target Sequence 
>C. ELEGANS:180793_AT
tcaatcggagtcatcggtcttccaccacaaaagcgtcttccagcagctctaattcgagaa
ttgacaattgttggatatttctcatctcgattgccacgaccgtcacttgccagttttcca
aaagttgctccgtataaattgagatttgaaaacgtgacaatctgtgttcctgttgatctg
cttgtcgaagattctcacgtattctcatcaataaatactcaaataatggcactctgcatc
aataatactgatctaaaaccacgaaaattgtatggaaaagacgatttaccgagtatttgt
gtgatcgatggaaactcgccggctcttcagtgcatcggattcggtattattcgtggtgtc
agtgtcgaggagcgcatcatttttgtggtgactcccgtcgatttgctaaaactcgaagaa
ccgcccgttctggtcagaggaatgagaattcagacaccgacgatgttctacactgctgat
ccctacaatcgttgcccatatgtgctgaatgatttggaacaaggaaattctgataacacg
cttgacggtctctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATCGGAGTCATCGGTCTTCCAC 424 633 1060 Antisense
CGTCTTCCAGCAGCTCTAATTCGAG 465 245 1093 Antisense
TATTTCTCATCTCGATTGCCACGAC 148 663 1135 Antisense
AATCTGTGTTCCTGTTGATCTGCTT 460 169 1218 Antisense
AAGATTCTCACGTATTCTCATCAAT 56 157 1247 Antisense
GCTCTTCAGTGCATCGGATTCGGTA 110 301 1381 Antisense
GGTGTCAGTGTCGAGGAGCGCATCA 96 501 1414 Antisense
GTGACTCCCGTCGATTTGCTAAAAC 288 483 1447 Antisense
CGACGATGTTCTACACTGCTGATCC 440 251 1517 Antisense
TCCCTACAATCGTTGCCCATATGTG 352 595 1539 Antisense
TGATAACACGCTTGACGGTCTCTAC 275 565 1590 Antisense
Sequence Source Affymetrix Proprietary Database