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[180792_at] 7TM chemoreceptor, srw family

Description F59D6.5 /REP_DB=WormBase Gene ID /WP=CE11484 /TR=O16341 /GB=AAB65880.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 11      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 30.6
(-1.7)
A 		21.7
(-3)
A 		29.3
(-1.9)
A 		62.4
(3)
A 		41
B 8.3
(-3)
A 		10.1
(-2.2)
A 		21.8
(3)
A 		11.2
(-1.7)
A 		14
C 24.9
(0.2)
A 		34.4
(1.6)
A 		2.7
(-3)
A 		43.8
(3)
A 		41
avr 21.3
(-2) 		22.1
(-1.8) 		17.9
(-3) 		39.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 5.2
(-2.4)
A 		15.1
(-0.7)
A 		1.7
(-3)
A 		2.4
(-2.9)
A 		36.7
(3)
A 		4.2
(-2.6)
A 		35
B 6
(-2.7)
A 		3.9
(-3)
A 		32.1
(1.4)
A 		42.2
(3)
A 		18.1
(-0.8)
A 		29.2
(1)
A 		38
C 20.9
(3)
A 		19.8
(2.7)
A 		3.7
(-2.4)
A 		1.8
(-3)
A 		14
(0.8)
A 		9.4
(-0.6)
A 		19
avr 10.7
(-3) 		12.9
(-1.9) 		12.5
(-2.1) 		15.5
(-0.6) 		22.9
(3) 		14.3
(-1.2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.1
(3)
A 		4.7
(-3)
A 		7.7
(-0.2)
A 		9.1
(1.1)
A 		6
B 2.6
(-2.6)
A 		2.5
(-2.8)
A 		5.1
(3)
A 		2.4
(-3)
A 		3
C 8.2
(1.9)
A 		9.9
(3)
A 		1
(-3)
A 		7.4
(1.3)
A 		9
avr 7.3
(3) 		5.7
(-0.6) 		4.6
(-3) 		6.3
(0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1
(-2.7)
A 		5.4
(-0.2)
A 		0.4
(-3)
A 		0.6
(-2.9)
A 		11.1
(3)
A 		1
(-2.7)
A 		11
B 2.1
(-2.5)
A 		1.3
(-3)
A 		7.8
(0.9)
A 		11.2
(3)
A 		7.4
(0.7)
A 		10.9
(2.8)
A 		10
C 7.7
(3)
A 		6
(1.6)
A 		0.9
(-2.6)
A 		0.4
(-3)
A 		4.5
(0.4)
A 		3.1
(-0.8)
A 		7
avr 3.6
(-2.2) 		4.2
(-1.5) 		3
(-3) 		4.1
(-1.6) 		7.7
(3) 		5
(-0.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15114
Sequence Type Exemplar sequence
Representative Public ID F59D6.5 NCBI
Target Description F59D6.5 /REP_DB=WormBase Gene ID /WP=CE11484 /TR=O16341 /GB=AAB65880.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071427 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-8) (srw-8) mRNA, complete cds. 11/11 None
SNAP00000018890 ENSEMBL cdna:SNAP chromosome:CEL140:V:3032563:3036992:-1 11/11 None
GENEFINDER00000018896 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3029482:3034163:-1 9/11 None
F59D6.5 ENSEMBL cdna:known chromosome:CEL140:V:3032473:3034163:-1 gene:F59D6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3032465-3034163(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-8
Ensembl F59D6.5
Entrez Gene 186615 Entrez gene
SwissProt O16341 EMBL-EBI
WormBase CE35329 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65879 Hypothetical protein F59D6.4 [Caenorhabditis elegans] ref|NP_503827.1| F59D6.4 [Caenorhabditis elegans] 0.0
blast AAB65880 Serpentine receptor, class w protein 8 [Caenorhabditis elegans] ref|NP_503828.2| Serpentine Receptor, class W family member (srw-8) [Caenorhabditis elegans] 1.0E-179
blast AAB65880 Serpentine receptor, class w protein 8 [Caenorhabditis elegans] ref|NP_503828.2| Serpentine Receptor, class W family member (srw-8) [Caenorhabditis elegans] 1.0E-175
blast AAB65880 Serpentine receptor, class w protein 8 [Caenorhabditis elegans] ref|NP_503828.2| Serpentine Receptor, class W family member (srw-8) [Caenorhabditis elegans] 1.0E-165
blast AAB65881 Hypothetical protein F59D6.6 [Caenorhabditis elegans] ref|NP_503829.1| F59D6.6 [Caenorhabditis elegans] 1.0E-157
blast CAB07718 Hypothetical protein ZC482.4 [Caenorhabditis elegans] ref|NP_499660.2| ZC482.4 [Caenorhabditis elegans] 1.0E-90
blast AAG24169 Hypothetical protein K12D9.12 [Caenorhabditis elegans] ref|NP_503824.1| K12D9.12 [Caenorhabditis elegans] 1.0E-56
blast CAE58134 Hypothetical protein CBG01222 [Caenorhabditis briggsae] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.7E-16
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.2E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503828.2 6 45-64,74-96,133-155,165-184,223-244,264-286
F59D6.5 6 45-64,74-96,133-155,165-184,223-244,264-286
SNAP00000018890 7 336-356,363-385,395-417,424-446,456-475,514-535,555-577
GENEFINDER00000018896 7 45-64,74-96,109-126,136-158,165-184,223-242,263-285
Sequence
Target Sequence 
>C. ELEGANS:180792_AT
gcgacctaaaatcggatgcctgcttgttctaactgttaccattatgagcagcgcatacag
ttttctctatttttcccgcgcaaaaattgttaaagaacgcgagtgttatttacacgaaag
aagtacctatgttttatacacccatgaaaatagcaacaaagagatgcaattccaactaat
ggacggatatattgctatggttgtctgttttttgtacattattgtggctggtacgcttat
cttccaattgcaaaaagctaaacaacggcggaaaaatttgaaggctgaaaaatctacttc
tacgtctggtctgattttattgatggctacgacggctttcttttcagaaactatctacgg
agtattttacttcttggactattatgtatattatgacaaggtttttgataactcaatgtt
ccaatatttggattcatttgtgctgatattgatgctcgtgagctcattcacacactgttt
cacatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACCTAAAATCGGATGCCTGCTT 595 289 495 Antisense
TGCCTGCTTGTTCTAACTGTTACCA 42 587 511 Antisense
GAGCAGCGCATACAGTTTTCTCTAT 646 389 540 Antisense
GTACCTATGTTTTATACACCCATGA 563 457 617 Antisense
ATTGCTATGGTTGTCTGTTTTTTGT 643 5 685 Antisense
TATTGTGGCTGGTACGCTTATCTTC 454 665 714 Antisense
GTACGCTTATCTTCCAATTGCAAAA 80 459 725 Antisense
AAAATCTACTTCTACGTCTGGTCTG 608 131 783 Antisense
ATTGATGGCTACGACGGCTTTCTTT 167 5 813 Antisense
GATGCTCGTGAGCTCATTCACACAC 649 413 945 Antisense
GCTCATTCACACACTGTTTCACATG 288 301 956 Antisense
Sequence Source Affymetrix Proprietary Database