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[180791_at]

Description F42G2.1 /REP_DB=WormBase Gene ID /WP=CE10306 /TR=O17103 /GB=AAB70359.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 08      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 33.3
(-2.9)
A 		97
(3)
A 		73.7
(0.9)
A 		31.9
(-3)
A 		65
B 72.1
(2.8)
A 		6.9
(-3)
A 		20.4
(-1.8)
A 		73.8
(3)
A 		67
C 9.3
(-2.9)
A 		8.2
(-3)
A 		44.2
(0)
A 		79.1
(3)
A 		71
avr 38.2
(-2.8) 		37.4
(-3) 		46.1
(-0.8) 		61.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 5
(-3)
A 		9.3
(-2.5)
A 		23.9
(-0.7)
A 		5.6
(-2.9)
A 		53.5
(3)
A 		8.3
(-2.6)
A 		49
B 43.5
(-0)
A 		33.8
(-1.3)
A 		66.8
(3)
A 		20.9
(-3)
A 		36.6
(-0.9)
A 		23.2
(-2.7)
A 		46
C 19.7
(-3)
A 		54.3
(3)
A 		38.2
(0.2)
A 		53.9
(2.9)
A 		21.4
(-2.7)
A 		37.7
(0.1)
A 		35
avr 22.7
(-3) 		32.5
(-0.1) 		43
(3) 		26.8
(-1.8) 		37.2
(1.3) 		23.1
(-2.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.1
(-0.3)
A 		21.1
(3)
A 		19.3
(2.3)
A 		4.7
(-3)
A 		16
B 23
(3)
A 		1.7
(-3)
A 		4.7
(-2.2)
A 		15.7
(0.9)
A 		21
C 3.1
(-2.6)
A 		2.3
(-3)
A 		15.4
(3)
A 		13.3
(2)
A 		13
avr 12.7
(2.5) 		8.4
(-3) 		13.1
(3) 		11.2
(0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.3
(-2.1)
A 		5.2
(-1.3)
A 		1.4
(-2.8)
A 		16.2
(3)
A 		2
(-2.6)
A 		15
B 15.1
(2.4)
A 		11.2
(0.2)
A 		16.2
(3)
A 		5.5
(-3)
A 		14.9
(2.3)
A 		8.7
(-1.2)
A 		11
C 7.3
(-2.8)
A 		16.6
(3)
A 		9.7
(-1.3)
A 		10.8
(-0.6)
A 		6.9
(-3)
A 		12.6
(0.5)
A 		10
avr 7.8
(-1.3) 		10.4
(1) 		10.4
(1) 		5.9
(-3) 		12.7
(3) 		7.8
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4641
Sequence Type Exemplar sequence
Representative Public ID F42G2.1 NCBI
Target Description F42G2.1 /REP_DB=WormBase Gene ID /WP=CE10306 /TR=O17103 /GB=AAB70359.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061875 NCBI Caenorhabditis elegans Variable ABnormal morphology family member (vab-19) (vab-19) mRNA, complete cds. 11/11 None
GENEFINDER00000004799 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2443293:2449372:1 11/11 None
T22D2.1 ENSEMBL cdna:known chromosome:CEL140:II:2443293:2451142:1 gene:T22D2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2443291-2446399(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol vab-19
Ensembl T22D2.1
Entrez Gene 173599 Entrez gene
SwissProt Q9N5D9 EMBL-EBI
WormBase CE34375 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39969 Variable abnormal morphology protein 19 [Caenorhabditis elegans] ref|NP_494276.2| Variable ABnormal morphology family member (vab-19) [Caenorhabditis elegans] gb|AAQ01772.1| VAB-19 [Caenorhabditis elegans] 0.0
blast T32290 hypothetical protein F42G2.1 - Caenorhabditis elegans 0.0
blast CAE73066 Hypothetical protein CBG20436 [Caenorhabditis briggsae] 1.0E-180
blast CAE73067 Hypothetical protein CBG20437 [Caenorhabditis briggsae] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 5.8E-6
Pfam IPR002110 EMBL-EBI Ankyrin 0.93
Pfam IPR002110 EMBL-EBI Ankyrin 3.6E-9
Pfam IPR002110 EMBL-EBI Ankyrin 9.6E-8
Sequence
Target Sequence 
>C. ELEGANS:180791_AT
tcccagacagtcgtgtcgggaccccaattgacttgggacttcatcaacaaaataatggac
acgtgacgccgtcaagattcgctaataatcgatatgatgacctacctccgacgcctacgc
ctacctttagaagggctccgtctcaaggtgacttgccacgtggattctccaccgccccct
caacaggtcccggggactttgcaagcctccggcgtggcagagaatttgctcttccacccg
agcaagagcaccactcgagacggtttttctcagcgtcgccaaagttgccgaggcgtggac
ttcaagccgggccatcaatcgatgttgaaagccatttcacatatgcacaaactcaaaacg
ggcagaaagtgcttgcaaggacacaatccacaagcacttcaccaccgccacaagctcctg
cttcagcgttcgaaccagtaaaacccctgtcaaatggaagcccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCAGACAGTCGTGTCGGGACCCC 13 595 704 Antisense
GTGACGCCGTCAAGATTCGCTAATA 289 483 766 Antisense
TCGATATGATGACCTACCTCCGACG 654 601 792 Antisense
GCCTACCTTTAGAAGGGCTCCGTCT 82 279 822 Antisense
CTCCGTCTCAAGGTGACTTGCCACG 373 235 839 Antisense
AAGCCTCCGGCGTGGCAGAGAATTT 573 147 906 Antisense
AGAGCACCACTCGAGACGGTTTTTC 334 69 948 Antisense
TTCTCAGCGTCGCCAAAGTTGCCGA 586 689 970 Antisense
GTTGCCGAGGCGTGGACTTCAAGCC 147 439 987 Antisense
GACTTCAAGCCGGGCCATCAATCGA 621 369 1001 Antisense
AACCCCTGTCAAATGGAAGCCCAAG 507 145 1145 Antisense
Sequence Source Affymetrix Proprietary Database