[Home] | [Total List]

[180790_at]

Description F45E4.4 /REP_DB=WormBase Gene ID /WP=CE10498 /TR=Q94226 /GB=AAK29815.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 38      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 174.4
(1.1)
P 		136.6
(-1.4)
A 		112.3
(-3)
A 		204.3
(3)
A 		92
B 223.8
(3)
P 		117.9
(-1.8)
A 		102.8
(-2.5)
A 		90.6
(-3)
A 		133
C 238.6
(3)
P 		151.5
(-0.6)
A 		96.7
(-2.9)
A 		95.1
(-3)
A 		144
avr 212.3
(3) 		135.3
(-1.3) 		103.9
(-3) 		130
(-1.6) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 89.6
(-0.1)
A 		116
(3)
P 		69.4
(-2.5)
A 		98.2
(0.9)
A 		67.2
(-2.7)
A 		65
(-3)
M 		51
B 112.1
(3)
A 		58
(-1.2)
A 		70.4
(-0.3)
A 		35.6
(-3)
A 		91
(1.3)
A 		61.1
(-1)
A 		77
C 74.3
(-1.2)
A 		106.1
(3)
P 		104.3
(2.8)
M 		81.2
(-0.3)
A 		83.3
(-0)
A 		61.2
(-3)
A 		45
avr 92
(2.7) 		93.4
(3) 		81.4
(0.7) 		71.7
(-1.2) 		80.5
(0.5) 		62.4
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 63.5
(3)
P 		29.7
(-2.9)
A 		29.4
(-3)
A 		29.9
(-2.9)
A 		34
B 71.4
(3)
P 		29.1
(-1.9)
A 		23.8
(-2.5)
A 		19.3
(-3)
A 		52
C 79
(3)
P 		43.6
(-0.4)
A 		33.7
(-1.3)
A 		16
(-3)
A 		63
avr 71.3
(3) 		34.1
(-1.5) 		29
(-2.1) 		21.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 16.5
(-2.7)
A 		41.2
(3)
P 		15.1
(-3)
A 		24.9
(-0.7)
A 		20.3
(-1.8)
A 		15.8
(-2.8)
M 		26
B 39
(3)
A 		19.3
(-1)
A 		17.1
(-1.4)
A 		9.4
(-3)
A 		37
(2.6)
A 		22.8
(-0.3)
A 		30
C 27.5
(1.2)
A 		32.4
(3)
P 		26.5
(0.8)
M 		16.3
(-3)
A 		26.9
(1)
A 		20.5
(-1.4)
A 		16
avr 27.7
(1.6) 		31
(3) 		19.6
(-1.9) 		16.9
(-3) 		28.1
(1.8) 		19.7
(-1.8) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10224
Sequence Type Exemplar sequence
Representative Public ID F45E4.4 NCBI
Target Description F45E4.4 /REP_DB=WormBase Gene ID /WP=CE10498 /TR=Q94226 /GB=AAK29815.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068835 NCBI Caenorhabditis elegans F45E4.4 (F45E4.4) mRNA, complete cds. 11/11 None
SNAP00000024158 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7613229:7619101:1 11/11 None
GENEFINDER00000024184 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7606465:7619101:1 11/11 None
F45E4.4 ENSEMBL cdna:known chromosome:CEL140:IV:7606465:7619101:1 gene:F45E4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7606470-7619107(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45E4.4
Entrez Gene 185795 Entrez gene
SwissProt Q94226 EMBL-EBI
WormBase CE10498 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29815 Hypothetical protein F45E4.4 [Caenorhabditis elegans] ref|NP_501236.1| F45E4.4 [Caenorhabditis elegans] 0.0
blast CAE61925 Hypothetical protein CBG05922 [Caenorhabditis briggsae] 0.0
blast AAF60483 Temporarily assigned gene name protein 80 [Caenorhabditis elegans] ref|NP_501235.1| Temporarily Assigned Gene name family member (tag-80) [Caenorhabditis elegans] 1.0E-131
Sequence
Target Sequence 
>C. ELEGANS:180790_AT
attccacctgaaatctcagcgtcaattgataaaacaatggcagaagtggatgcactactt
ggacaagtgtacacaaatgaaaaggcaataccaaatttgttgtgttttgatcaaagcaat
ttctctaatcatccaccaacttcatctgcaagtacatctactgctgatgatctcattcta
ttgaaaaacaacaattcgtcgtctccatcattccttcttccacttcaatcttcagtcctc
ggtagccaattggattcagttcgcgatgacaacgaaaggaatgaaaatgaaactacttct
ccaagaggtctaaaacgctcgccaggcatgcttcttccttctccaacatccacaagtatc
ttcccaatgcctccaactgctgctgaatcggttggagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCACCTGAAATCTCAGCGTCAA 639 7 6559 Antisense
AAAGCAATTTCTCTAATCATCCACC 8 125 6671 Antisense
CATCCACCAACTTCATCTGCAAGTA 376 211 6688 Antisense
ATCTACTGCTGATGATCTCATTCTA 550 31 6714 Antisense
AAACAACAATTCGTCGTCTCCATCA 401 129 6744 Antisense
CTTCAGTCCTCGGTAGCCAATTGGA 367 219 6788 Antisense
AGCCAATTGGATTCAGTTCGCGATG 159 85 6802 Antisense
GAAACTACTTCTCCAAGAGGTCTAA 379 357 6847 Antisense
TAAAACGCTCGCCAGGCATGCTTCT 128 641 6869 Antisense
CTCCAACATCCACAAGTATCTTCCC 331 235 6899 Antisense
ACTGCTGCTGAATCGGTTGGAGCTG 217 99 6934 Antisense
Sequence Source Affymetrix Proprietary Database