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[180789_s_at]

Description F38E9.4 /REP_DB=WormBase Gene ID /WP=CE07200 /TR=Q20174 /GB=AAA93346.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 109.1
(1.8)
A 		90.7
(-3)
A 		95.7
(-1.7)
A 		113.5
(3)
A 		23
B 63.8
(-2.7)
A 		166.4
(3)
A 		90
(-1.2)
A 		57.7
(-3)
A 		109
C 101.8
(-0.5)
A 		145.2
(1.5)
A 		49.6
(-3)
A 		177.3
(3)
M 		128
avr 91.6
(-1.6) 		134.1
(3) 		78.4
(-3) 		116.2
(1.1) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 119.2
(3)
A 		95
(1)
A 		47.5
(-2.8)
A 		70.2
(-1)
A 		49.3
(-2.7)
A 		45.2
(-3)
A 		74
B 116.3
(3)
A 		74.5
(0.5)
A 		14.9
(-3)
A 		90.1
(1.4)
A 		53.8
(-0.7)
A 		50.4
(-0.9)
A 		101
C 68.7
(0.1)
A 		96.3
(3)
A 		76.4
(0.9)
A 		40.1
(-3)
A 		58.7
(-1)
A 		82.4
(1.5)
A 		56
avr 101.4
(3) 		88.6
(1.6) 		46.3
(-3) 		66.8
(-0.8) 		53.9
(-2.2) 		59.3
(-1.6) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 39.7
(3)
A 		19.7
(-2.2)
A 		25
(-0.8)
A 		16.6
(-3)
A 		23
B 20.3
(-1.3)
A 		41.1
(3)
A 		20.9
(-1.2)
A 		12.3
(-3)
A 		29
C 33.7
(1)
A 		41.7
(3)
A 		17.3
(-3)
A 		29.9
(0.1)
M 		24
avr 31.2
(1.8) 		34.2
(3) 		21.1
(-2.4) 		19.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 22
(-0)
A 		33.8
(3)
A 		10.3
(-3)
A 		17.8
(-1.1)
A 		14.9
(-1.8)
A 		11
(-2.8)
A 		24
B 40.5
(3)
A 		24.8
(0.4)
A 		3.6
(-3)
A 		23.9
(0.3)
A 		21.9
(-0)
A 		18.8
(-0.5)
A 		37
C 25.5
(1.9)
A 		29.4
(3)
A 		19.5
(0.2)
A 		8.1
(-3)
A 		19
(0.1)
A 		27.6
(2.5)
A 		21
avr 29.3
(3) 		29.3
(3) 		11.1
(-3) 		16.6
(-1.2) 		18.6
(-0.5) 		19.1
(-0.4) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180789_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17663
Sequence Type Exemplar sequence
Representative Public ID F38E9.4 NCBI
Target Description F38E9.4 /REP_DB=WormBase Gene ID /WP=CE07200 /TR=Q20174 /GB=AAA93346.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078269(11), NM_068571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078269 NCBI Caenorhabditis elegans F38E9.4 (F38E9.4) mRNA, complete cds. 11/11 None
NM_068571 NCBI Caenorhabditis elegans Y73B6BL.16 (Y73B6BL.16) mRNA, complete cds. 11/11 A 
SNAP00000032044 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6346651:6347463:-1 11/11 None
GENEFINDER00000032080 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6346651:6347463:-1 11/11 None
SNAP00000037538 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16239926:16240738:1 11/11 None
GENEFINDER00000037547 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16239926:16240738:1 11/11 None
SNAP00000030336 ENSEMBL cdna:SNAP chromosome:CEL140:X:16451856:16452473:1 11/11 None
GENEFINDER00000030345 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16451856:16452668:1 9/11 None
Y73B6BL.16 ENSEMBL cdna:known chromosome:CEL140:IV:6346651:6347463:-1 gene:Y73B6BL.16 11/11 A 
F38E9.4 ENSEMBL cdna:known chromosome:CEL140:X:16451856:16452473:1 gene:F38E9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl Y73B6BL.16
F38E9.4
Entrez Gene 185469 Entrez gene
190652 Entrez gene
SwissProt Q20174 EMBL-EBI
Q9GUG0 EMBL-EBI
WormBase CE07200 Wormbase
CE26286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG23472 Hypothetical protein Y73B6BL.16 [Caenorhabditis elegans] ref|NP_500972.1| Y73B6BL.16 [Caenorhabditis elegans] 1.0E-151
blast AAG23472 Hypothetical protein Y73B6BL.16 [Caenorhabditis elegans] ref|NP_500972.1| Y73B6BL.16 [Caenorhabditis elegans] 1.0E-144
blast AAA93346 Hypothetical protein F38E9.4 [Caenorhabditis elegans] ref|NP_510670.1| F38E9.4 [Caenorhabditis elegans] 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:180789_S_AT
ccccacccgatgacgacatgatagttgattcttcaccaactgctacaattccgcctactt
gtgacaatattctgcgaaatcaaaacttgccatcaacaccagcttccggacagccaagta
tcaaggaattgatcgaacgaatcaccattttggagaaaactgtcaaggaacaatcgaaga
aaattgccgagttggaagctactaaaggtttcccattaatcaccaatgatgctagcaaaa
gtaagagtaaactttactccgctgtagtccaaaacgaccctcaatctgtgaaaatcatcg
aaaaggctcacttcgctgctgatctccgaaagctcggggaaaactcgatttacgcgatta
ttgagaatgtaccggattgcaagaaagaagaacaaacgacaattgatgcctcactcatgg
aaaacttagccaagctggatactcttccgaaacctgaacaattcttccgaatcaaatgca
aaaaaccggatgttccttctcgccctctcaaggttaagtttgctactgaatatcaacggg
atactttcattcgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCACCCGATGACGACATGATAGT 5 263 17 Antisense
TCTTCACCAACTGCTACAATTCCGC 163 615 46 Antisense
CAATTCCGCCTACTTGTGACAATAT 533 179 62 Antisense
TCAAAACTTGCCATCAACACCAGCT 635 629 96 Antisense
TGTAGTCCAAAACGACCCTCAATCT 200 559 279 Antisense
TCGAAAAGGCTCACTTCGCTGCTGA 559 601 314 Antisense
GCTGCTGATCTCCGAAAGCTCGGGG 627 297 331 Antisense
ACGACAATTGATGCCTCACTCATGG 311 93 412 Antisense
GCAAAAAACCGGATGTTCCTTCTCG 447 207 494 Antisense
TTCTCGCCCTCTCAAGGTTAAGTTT 447 693 513 Antisense
TCAACGGGATACTTTCATTCGACAA 449 629 549 Antisense
Sequence Source Affymetrix Proprietary Database