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[180788_at]

Description H21P03.2 /REP_DB=WormBase Gene ID /WP=CE18820 /TR=Q9XTV3 /GB=CAB09113.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 16      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 212.4
(-3)
P 		226.8
(-2.6)
P 		366.7
(0.9)
P 		447.6
(3)
P 		235
B 252
(-2.7)
P 		243
(-3)
P 		312.9
(-0.6)
P 		416.9
(3)
P 		174
C 196.4
(-3)
P 		220
(-2.4)
P 		309.5
(-0.1)
P 		429
(3)
P 		233
avr 220.3
(-3) 		229.9
(-2.7) 		329.7
(0.1) 		431.2
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 250.6
(-2.8)
P 		235.2
(-3)
P 		279.4
(-2.6)
P 		375.4
(-1.6)
P 		665.8
(1.3)
P 		839.8
(3)
P 		605
B 243.7
(-2.9)
P 		232.5
(-3)
P 		318.6
(-2.3)
P 		485
(-1.1)
P 		725.9
(0.8)
P 		1010.1
(3)
P 		778
C 171.8
(-3)
P 		247.3
(-2.4)
P 		286.2
(-2.1)
P 		486.2
(-0.5)
P 		593.5
(0.4)
P 		915.9
(3)
P 		744
avr 222
(-3) 		238.3
(-2.9) 		294.7
(-2.4) 		448.9
(-1.1) 		661.7
(0.8) 		921.9
(3) 		700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 77.3
(0.6)
P 		49.2
(-3)
P 		95.9
(3)
P 		65.5
(-0.9)
P 		47
B 80.4
(1.3)
P 		60
(-3)
P 		72.5
(-0.4)
P 		88.8
(3)
P 		29
C 65
(-2.8)
P 		63.2
(-3)
P 		107.9
(3)
P 		72.3
(-1.8)
P 		45
avr 74.2
(-0.1) 		57.5
(-3) 		92.1
(3) 		75.5
(0.1) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 46.2
(-3)
P 		83.6
(-1.6)
P 		60.9
(-2.4)
P 		95.2
(-1.1)
P 		200.9
(2.9)
P 		204.5
(3)
P 		158
B 84.8
(-2.9)
P 		77.4
(-3)
P 		77.4
(-3)
P 		128.5
(-2)
P 		294.9
(1.4)
P 		376.7
(3)
P 		299
C 63.7
(-3)
P 		75.4
(-2.7)
P 		72.8
(-2.8)
P 		97.8
(-2.2)
P 		192
(0.2)
P 		306.6
(3)
P 		243
avr 64.9
(-3) 		78.8
(-2.6) 		70.4
(-2.9) 		107.2
(-1.9) 		229.3
(1.3) 		295.9
(3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9795
Sequence Type Exemplar sequence
Representative Public ID H21P03.2 NCBI
Target Description H21P03.2 /REP_DB=WormBase Gene ID /WP=CE18820 /TR=Q9XTV3 /GB=CAB09113.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069766 NCBI Caenorhabditis elegans H21P03.2 (H21P03.2) mRNA, complete cds. 11/11 None
SNAP00000044459 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11480824:11482315:1 11/11 None
GENEFINDER00000044466 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11480824:11482315:1 11/11 None
H21P03.2 ENSEMBL cdna:known chromosome:CEL140:IV:11480566:11482384:1 gene:H21P03.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11480571-11482321(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H21P03.2
Entrez Gene 186758 Entrez gene
SwissProt Q9XTV3 EMBL-EBI
WormBase CE18820 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB09113 Hypothetical protein H21P03.2 [Caenorhabditis elegans] ref|NP_502167.1| H21P03.2 [Caenorhabditis elegans] 0.0
blast CAE62110 Hypothetical protein CBG06148 [Caenorhabditis briggsae] 1.0E-130
blast CAE62110 Hypothetical protein CBG06148 [Caenorhabditis briggsae] 1.0E-128
blast NP_001018359 hypothetical protein LOC553544 [Danio rerio] gb|AAH95037.1| Hypothetical protein LOC553544 [Danio rerio] 4.0E-11
blast NP_001018359 hypothetical protein LOC553544 [Danio rerio] gb|AAH95037.1| Hypothetical protein LOC553544 [Danio rerio] 5.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502167.1 1 20-42
H21P03.2 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:180788_AT
ctgactcctgagctggtttttgcgagcagctcgaaaaaagacgatgatggtcctcctcat
tataaaaaattcattcagcctgcagtttatccatttaatattggttgcgatttcattgtc
caactagttgatgttgaacgtgttgagaaacagaaaaagatccgcgagaaggttgagaga
ggtgcgaagagaaaagaacccgcagcacttgtcaaagtaagcgataaggcgagaaacgtt
caaagtgaagaggtttcaatctcaaaagagcttcaacatgttctgaaagttctgaaaaaa
gagcttaaaactcggaagacggatcaaatcgactattacgaactcatcacaaatccgact
agtttctctagaacggttgaaaatatgttctacgtctcgtatttgatgcgcgatcgtgaa
gtttacctgctagaagaaaacggtgttccaattctgaaaaaacctaccgctgtgaatgat
caagaaaaattgcaaaatgatgaacgcaactctacccacggacttactcctttgagcttt
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGACTCCTGAGCTGGTTTTTGCGA 252 239 790 Antisense
CGATGATGGTCCTCCTCATTATAAA 557 247 831 Antisense
ATTCAGCCTGCAGTTTATCCATTTA 92 13 862 Antisense
TTGCGATTTCATTGTCCAACTAGTT 574 681 894 Antisense
AGAAAAGAACCCGCAGCACTTGTCA 572 71 979 Antisense
ATCACAAATCCGACTAGTTTCTCTA 446 25 1135 Antisense
ACGTCTCGTATTTGATGCGCGATCG 179 93 1181 Antisense
TGCGCGATCGTGAAGTTTACCTGCT 7 585 1196 Antisense
AAAACCTACCGCTGTGAATGATCAA 166 131 1248 Antisense
AAATGATGAACGCAACTCTACCCAC 119 121 1284 Antisense
CACGGACTTACTCCTTTGAGCTTTG 122 199 1306 Antisense
Sequence Source Affymetrix Proprietary Database