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[180786_at]

Description K09C6.9 /REP_DB=WormBase Gene ID /WP=CE12004 /TR=O16945 /GB=AAB70667.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 935
1 2 3 4 range
A 6.6
(-3)
A 		46.3
(-2.7)
A 		757.4
(3)
P 		10.8
(-3)
A 		751
B 9.3
(-3)
A 		88.7
(-2.5)
A 		941.7
(3)
P 		26.8
(-2.9)
A 		932
C 8.1
(-3)
A 		76.6
(-2.4)
A 		725.7
(3)
A 		8.5
(-3)
A 		718
avr 8
(-3) 		70.5
(-2.5) 		808.3
(3) 		15.4
(-2.9) 		800

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6.3
(-2.7)
A 		20.3
(-0.4)
A 		4.7
(-3)
A 		8.8
(-2.3)
A 		40.2
(3)
A 		6.5
(-2.7)
A 		36
B 5.1
(-2.9)
A 		8.8
(-0.6)
A 		6.7
(-1.9)
A 		5
(-3)
A 		9
(-0.5)
A 		14.6
(3)
A 		10
C 10
(-2.2)
A 		10.8
(-2.1)
A 		5.8
(-2.9)
A 		5.5
(-3)
A 		11.9
(-1.9)
A 		39.2
(3)
A 		34
avr 7.1
(-2.4) 		13.3
(0.1) 		5.7
(-3) 		6.4
(-2.7) 		20.4
(3) 		20.1
(2.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 2.4
(-3)
A 		10
(-2.7)
A 		198
(3)
P 		1.6
(-3)
A 		196
B 3
(-3)
A 		21.9
(-2.5)
A 		218.2
(3)
P 		5.7
(-2.9)
A 		215
C 2.7
(-3)
A 		22
(-2.5)
A 		252.9
(3)
A 		1.4
(-3)
A 		252
avr 2.7
(-3) 		18
(-2.6) 		223
(3) 		2.9
(-3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		7.2
(0.4)
A 		1
(-3)
A 		2.2
(-2.4)
A 		12.1
(3)
A 		1.6
(-2.7)
A 		11
B 1.8
(-2.3)
A 		2.9
(-0.7)
A 		1.6
(-2.6)
A 		1.3
(-3)
A 		3.7
(0.5)
A 		5.4
(3)
A 		4
C 3.7
(-1.7)
A 		3.3
(-1.9)
A 		1.5
(-2.8)
A 		1.1
(-3)
A 		3.8
(-1.7)
A 		13.1
(3)
A 		12
avr 2.2
(-2.1) 		4.5
(0.5) 		1.4
(-3) 		1.5
(-2.9) 		6.5
(2.8) 		6.7
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14994
Sequence Type Exemplar sequence
Representative Public ID K09C6.9 NCBI
Target Description K09C6.9 /REP_DB=WormBase Gene ID /WP=CE12004 /TR=O16945 /GB=AAB70667.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070942
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K09C6.9 ENSEMBL cdna:known chromosome:CEL140:V:853320:854836:-1 gene:K09C6.9 None
SNAP00000012273 ENSEMBL cdna:SNAP chromosome:CEL140:V:854027:854894:-1 None
NM_070942 NCBI Caenorhabditis elegans K09C6.9 (K09C6.9) mRNA, complete cds. None
GENEFINDER00000012281 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:853112:854894:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012272 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:853319-854847(-) 96.3 100.0
Public Domain and Genome References
Gene Title
Ensembl K09C6.9
Entrez Gene 187204 Entrez gene
SwissProt O16945 EMBL-EBI
WormBase CE35339 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70667 Hypothetical protein K09C6.9 [Caenorhabditis elegans] ref|NP_503343.3| K09C6.9 [Caenorhabditis elegans] 3.0E-87
blast AAB70667 Hypothetical protein K09C6.9 [Caenorhabditis elegans] ref|NP_503343.3| K09C6.9 [Caenorhabditis elegans] 1.0E-86
blast CAE62310 Hypothetical protein CBG06375 [Caenorhabditis briggsae] 3.0E-80
blast CAE62310 Hypothetical protein CBG06375 [Caenorhabditis briggsae] 8.0E-67
blast AAB69902 Hypothetical protein T02B11.4 [Caenorhabditis elegans] ref|NP_503347.2| T02B11.4 [Caenorhabditis elegans] 2.0E-66
blast AAB69902 Hypothetical protein T02B11.4 [Caenorhabditis elegans] ref|NP_503347.2| T02B11.4 [Caenorhabditis elegans] 1.0E-54
blast CAE62310 Hypothetical protein CBG06375 [Caenorhabditis briggsae] 2.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000012273 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:180786_AT
aagctcgctaggatacggtactgtgaaatcggttataacaaaggttgcaaggcatgtagg
taggcacgtgatgtcaggctgtcccatcacgattctcgcatgcgccgatactcatttcta
caatgacccaaaagatccggagcttgtgtccaaagccaagacatgtgtgatcaacaacag
tatgaacaaggcgatcgctgcaatgaatctgtacagcgggtccttcaattttcgcgcttt
ttttccagtcaacggctgcacaaacctctcggatcttgtctcaaagcttgccacaccatt
cataaacctttgcaaaccagttatcaacaaagccctatccaccttggacacctgcaaggc
taacaataagcaaacaggcaatgccaaacagaccgcctgtatgaacaaagtatacacaaa
ttgtattgcaatggtcactaaacagtttgtcaataaagtgtgcactgggttggctaagaa
aatgaacgcaaaagagtggaattgctgcaagacttatgtgccaaaggtcgccgatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTCGCTAGGATACGGTACTGTG 72 137 171 Antisense
GGTAGGCACGTGATGTCAGGCTGTC 108 505 229 Antisense
ATGCGCCGATACTCATTTCTACAAT 36 43 270 Antisense
GATCCGGAGCTTGTGTCCAAAGCCA 551 415 304 Antisense
TGTACAGCGGGTCCTTCAATTTTCG 447 559 380 Antisense
TTTCCAGTCAACGGCTGCACAAACC 569 667 412 Antisense
CTCTCGGATCTTGTCTCAAAGCTTG 137 231 436 Antisense
TCAAAGCTTGCCACACCATTCATAA 89 629 451 Antisense
AGTTATCAACAAAGCCCTATCCACC 532 63 489 Antisense
ATCCACCTTGGACACCTGCAAGGCT 168 41 507 Antisense
CTTATGTGCCAAAGGTCGCCGATGC 185 223 683 Antisense
Sequence Source Affymetrix Proprietary Database