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[180785_at]

Description K01G12.3 /REP_DB=WormBase Gene ID /WP=CE16202 /TR=O45633 /GB=CAB05237.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 9.3
(-2.9)
A 		7.8
(-3)
A 		7.6
(-3)
A 		79
(3)
A 		71
B 40.5
(3)
A 		15.9
(-1.2)
A 		5.3
(-3)
A 		31
(1.4)
A 		35
C 4.4
(-3)
A 		5.9
(-2.9)
A 		5.2
(-3)
A 		106
(3)
P 		102
avr 18.1
(-1.9) 		9.9
(-2.6) 		6
(-3) 		72
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 19
(-0.9)
A 		5.8
(-3)
A 		44
(3)
P 		38
(2.1)
A 		37.8
(2)
A 		28.1
(0.5)
A 		38
B 40.1
(3)
A 		4.8
(-3)
A 		6.9
(-2.6)
A 		7.4
(-2.6)
A 		19.3
(-0.5)
A 		8.6
(-2.4)
A 		35
C 5.8
(-2.6)
A 		13.2
(-1.5)
A 		3.5
(-3)
A 		34.1
(1.7)
A 		3.6
(-3)
A 		42.5
(3)
A 		39
avr 21.6
(1.4) 		7.9
(-3) 		18.1
(0.3) 		26.5
(3) 		20.2
(1) 		26.4
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.4
(-2)
A 		1.7
(-3)
A 		2
(-2.8)
A 		11.6
(3)
A 		10
B 12.9
(3)
A 		3.9
(-1.6)
A 		1.2
(-3)
A 		6.6
(-0.2)
A 		12
C 1.5
(-3)
A 		1.7
(-2.9)
A 		1.8
(-2.9)
A 		17.9
(3)
P 		16
avr 5.9
(-0.6) 		2.4
(-2.6) 		1.7
(-3) 		12
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.5
(-2)
A 		2
(-3)
A 		9.6
(1.9)
P 		9.6
(1.9)
A 		11.4
(3)
A 		6.8
(0.1)
A 		9
B 14
(3)
A 		1.6
(-3)
A 		1.7
(-3)
A 		1.9
(-2.9)
A 		7.8
(-0)
A 		3.2
(-2.2)
A 		12
C 2.1
(-2.5)
A 		4
(-1.6)
A 		0.9
(-3)
A 		6.9
(-0.3)
A 		1.2
(-2.9)
A 		14.2
(3)
A 		13
avr 6.5
(1.3) 		2.5
(-3) 		4.1
(-1.3) 		6.1
(0.9) 		6.8
(1.6) 		8.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9788
Sequence Type Exemplar sequence
Representative Public ID K01G12.3 NCBI
Target Description K01G12.3 /REP_DB=WormBase Gene ID /WP=CE16202 /TR=O45633 /GB=CAB05237.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070322 NCBI Caenorhabditis elegans K01G12.3 (K01G12.3) mRNA, complete cds. 11/11 None
K01G12.3 ENSEMBL cdna:known chromosome:CEL140:IV:14193550:14197019:1 gene:K01G12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037704 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14193555-14197025(+) 95.31 100.0
Public Domain and Genome References
Gene Title
Ensembl K01G12.3
Entrez Gene 186853 Entrez gene
SwissProt O45633 EMBL-EBI
WormBase CE16202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05237 Hypothetical protein K01G12.3 [Caenorhabditis elegans] ref|NP_502723.1| K01G12.3 [Caenorhabditis elegans] 0.0
blast CAB05169 Hypothetical protein F02H6.2 [Caenorhabditis elegans] ref|NP_502724.1| F02H6.2 [Caenorhabditis elegans] 2.0E-56
Sequence
Target Sequence 
>C. ELEGANS:180785_AT
gagctttcgtgtagcaattcagcatcaaatattggaaatcaagacagagaagattcacaa
gatccgccacaaagatcacgaaaacgaggaaatcaaagtgaattgccagtttccaaaagg
gcaagagaacaagaggaggacgagttcattgatttttattttctttttttttctaatttt
tttcacttcattttgatattcagtgaccccttgcgacacaccatggagcgcccgaatcga
ccaaacgctccaaatccaatggatattgaggaagaggagttcgacgacgagcaaatcgat
gaccaagcagagcgagacggttggaatgaggtgatagataatgttggagaatttgaagat
gaagaagtagatgaggaagtagatgaggaagaagatcatgcagaagatgaggagagagac
acagacgatgaagtagagggtttcgacaaagaaatagtcagcgacattgatgatgaagaa
gtacctcaaatcgactttggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTTTCGTGTAGCAATTCAGCAT 42 389 1246 Antisense
AGAAGATTCACAAGATCCGCCACAA 664 73 1293 Antisense
ATCCGCCACAAAGATCACGAAAACG 158 39 1307 Antisense
GGAGGACGAGTTCATTGATTTTTAT 649 515 1380 Antisense
TTTGATATTCAGTGACCCCTTGCGA 296 667 1437 Antisense
GAGCGCCCGAATCGACCAAACGCTC 46 387 1471 Antisense
CGACCAAACGCTCCAAATCCAATGG 629 249 1483 Antisense
AGAGGAGTTCGACGACGAGCAAATC 214 69 1518 Antisense
GAGCAAATCGATGACCAAGCAGAGC 679 389 1534 Antisense
GAGCGAGACGGTTGGAATGAGGTGA 82 387 1555 Antisense
GAAGTACCTCAAATCGACTTTGGAT 290 335 1723 Antisense
Sequence Source Affymetrix Proprietary Database