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[180784_at]

Description R01H2.4 /REP_DB=WormBase Gene ID /WP=CE00803 /TR=Q21630 /GB=AAA50646.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 92      4grp_total > 19      6grp_high1_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 99.6
(-2.3)
A 		109.8
(-2)
A 		72.3
(-3)
A 		308.4
(3)
P 		236
B 108.4
(-3)
M 		176.9
(3)
A 		112.1
(-2.7)
A 		140.6
(-0.2)
A 		69
C 140.3
(-0.9)
P 		136.2
(-1.1)
A 		92.2
(-3)
A 		228.1
(3)
P 		136
avr 116.1
(-1.9) 		141
(-0.8) 		92.2
(-3) 		225.7
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 113.2
(-3)
P 		142.1
(-2.3)
P 		144.1
(-2.2)
P 		355.7
(3)
P 		355.5
(3)
P 		149.4
(-2.1)
P 		243
B 142.1
(-1.8)
P 		166
(-1.5)
P 		67.7
(-3)
A 		301.3
(0.6)
P 		452.7
(3)
P 		140.3
(-1.9)
P 		385
C 113.5
(-3)
P 		219.5
(-0.6)
P 		132.1
(-2.6)
P 		373.9
(3)
P 		301.4
(1.3)
P 		158.6
(-2)
P 		260
avr 122.9
(-2.8) 		175.9
(-1.6) 		114.6
(-3) 		343.6
(2.4) 		369.9
(3) 		149.4
(-2.2) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 36.3
(1)
A 		23.8
(-1.9)
A 		18.9
(-3)
A 		45.1
(3)
P 		26
B 34.6
(-0.1)
M 		43.7
(3)
A 		26
(-3)
A 		30
(-1.6)
A 		18
C 46.4
(3)
P 		39.2
(-0)
A 		32.1
(-3)
A 		38.5
(-0.3)
P 		14
avr 39.1
(3) 		35.6
(1.4) 		25.7
(-3) 		37.9
(2.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 20.9
(-3)
P 		50.5
(-0.9)
P 		31.4
(-2.3)
P 		90.2
(1.8)
P 		107.3
(3)
P 		36.4
(-1.9)
P 		86
B 49.4
(-1.8)
P 		55.3
(-1.6)
P 		16.4
(-3)
A 		79.8
(-0.7)
P 		183.9
(3)
P 		52.3
(-1.7)
P 		168
C 42.1
(-2.2)
P 		67
(0.1)
P 		33.6
(-3)
P 		75.2
(0.9)
P 		97.5
(3)
P 		53.1
(-1.2)
P 		64
avr 37.5
(-2.4) 		57.6
(-1.2) 		27.1
(-3) 		81.7
(0.2) 		129.6
(3) 		47.3
(-1.8) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6926
Sequence Type Exemplar sequence
Representative Public ID R01H2.4 NCBI
Target Description R01H2.4 /REP_DB=WormBase Gene ID /WP=CE00803 /TR=Q21630 /GB=AAA50646.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066137 NCBI Caenorhabditis elegans R01H2.4 (R01H2.4) mRNA, complete cds. 11/11 None
SNAP00000040673 ENSEMBL cdna:SNAP chromosome:CEL140:III:7058568:7062387:-1 11/11 None
GENEFINDER00000040679 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7058568:7064770:-1 11/11 None
R01H2.4 ENSEMBL cdna:known chromosome:CEL140:III:7061037:7061951:-1 gene:R01H2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7061034-7061949(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01H2.4
Entrez Gene 187511 Entrez gene
WormBase CE38969 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498537 EGG sterile (unfertilizable) family member (egg-2) [Caenorhabditis elegans] gb|AAA50645.1| Egg sterile (unfertilizable) protein 2 [Caenorhabditis elegans] 0.0
blast CAE63952 Hypothetical protein CBG08534 [Caenorhabditis briggsae] 0.0
blast AAA68376 Egg sterile (unfertilizable) protein 1 [Caenorhabditis elegans] ref|NP_498237.2| EGG sterile (unfertilizable) family member (egg-1) [Caenorhabditis elegans] 0.0
blast AAA50646 Hypothetical protein R01H2.4 [Caenorhabditis elegans] 0.0
blast NP_498538 R01H2.4 [Caenorhabditis elegans] 1.0E-117
blast AAA50646 Hypothetical protein R01H2.4 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 5.3E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 6.0E-6
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 4.0E-9
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 3.6E-9
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.8E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.1E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.0E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 5.3E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 6.0E-6
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 4.0E-9
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 3.6E-9
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.8E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.1E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000040673 1 398-420
GENEFINDER00000040679 4 647-669,676-693,703-722,769-791
Sequence
Target Sequence 
>C. ELEGANS:180784_AT
gtcgggattatgctctctagaagtcatgcgaaaattcgtttcaaactattatgattcgag
ttgtccatgtattgttcgaaaagcgaatgataataatacctcgccgaaaatgtcaatcta
tctgccacattggaagactaaagatttcccatcgagtaggatttcacagcatttggtggc
tacgatgaatctaaattcattgtttgttgctggaggtttcggtgatttagctgtagaaga
tgctgttccatcggcaactggtgatcccaaaaaagtcagtcatctccaacactttgggct
tctatcattcagaaattctccgaaaaagacttatttgagaacaccagaggaaaaaacatt
gctcggcaaaaagtctcgtcagtcccgaaacaagaagcaaaagagaactaacaaacctgt
gaaaattccgatgaatgaaaagaatgcaaatcaagtcgaattggtgcagtacccaatatg
cgttgttctttgggatcgccagcatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGGATTATGCTCTCTAGAAGTC 40 473 66 Antisense
GAGTTGTCCATGTATTGTTCGAAAA 437 397 123 Antisense
ATGTCAATCTATCTGCCACATTGGA 293 47 175 Antisense
GGATTTCACAGCATTTGGTGGCTAC 23 511 224 Antisense
GTTTGTTGCTGGAGGTTTCGGTGAT 103 447 267 Antisense
TGCTGTTCCATCGGCAACTGGTGAT 535 579 306 Antisense
GTCAGTCATCTCCAACACTTTGGGC 325 467 340 Antisense
AACACTTTGGGCTTCTATCATTCAG 362 135 353 Antisense
AAGTCTCGTCAGTCCCGAAACAAGA 524 157 436 Antisense
GCAGTACCCAATATGCGTTGTTCTT 143 313 531 Antisense
TGTTCTTTGGGATCGCCAGCATGAA 688 561 549 Antisense
Sequence Source Affymetrix Proprietary Database