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[180782_at]

Description B0524.4 /REP_DB=WormBase Gene ID /WP=CE20466 /TR=Q9N600 /GB=AAF39749.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 16.9
(-1.5)
A 		2
(-3)
A 		2.8
(-2.9)
A 		60.6
(3)
A 		59
B 6
(-2.9)
A 		51.7
(3)
A 		5.1
(-3)
A 		19.5
(-1.1)
A 		47
C 27
(3)
A 		6.4
(-2.1)
A 		2.6
(-3)
A 		23.1
(2)
A 		24
avr 16.6
(-0.5) 		20
(0.2) 		3.5
(-3) 		34.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 42.7
(3)
A 		16.1
(-1.1)
A 		5.1
(-2.8)
A 		31.1
(1.2)
A 		3.9
(-3)
A 		23.4
(0)
A 		39
B 14.3
(-0.1)
A 		4.5
(-3)
A 		5.3
(-2.7)
A 		24.7
(3)
A 		4.7
(-2.9)
A 		4.4
(-3)
A 		20
C 2.2
(-3)
A 		2.2
(-3)
A 		5.7
(-2.3)
A 		30.5
(3)
A 		9.6
(-1.4)
A 		5.5
(-2.3)
A 		28
avr 19.7
(0.7) 		7.6
(-2.4) 		5.4
(-3) 		28.8
(3) 		6.1
(-2.8) 		11.1
(-1.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.2
(1.1)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		8.9
(3)
A 		9
B 1.9
(-2.6)
A 		12.8
(3)
A 		1.2
(-3)
A 		4.2
(-1.4)
A 		12
C 8.9
(3)
A 		1.8
(-2.3)
A 		0.9
(-3)
A 		3.9
(-0.8)
A 		8
avr 5.7
(3) 		5
(2.1) 		0.9
(-3) 		5.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 7.9
(3)
A 		5.7
(1.1)
A 		1.1
(-3)
A 		7.9
(3)
A 		1.2
(-2.9)
A 		5.7
(1.1)
A 		7
B 5
(1.3)
A 		1.5
(-2.8)
A 		1.3
(-3)
A 		6.5
(3)
A 		1.9
(-2.3)
A 		1.7
(-2.5)
A 		5
C 0.8
(-2.9)
A 		0.7
(-3)
A 		1.4
(-2.2)
A 		6.1
(3)
A 		3.1
(-0.3)
A 		1.9
(-1.7)
A 		5
avr 4.6
(0.6) 		2.6
(-1.6) 		1.3
(-3) 		6.8
(3) 		2.1
(-2.1) 		3.1
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180782_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8302
Sequence Type Exemplar sequence
Representative Public ID B0524.4 NCBI
Target Description B0524.4 /REP_DB=WormBase Gene ID /WP=CE20466 /TR=Q9N600 /GB=AAF39749.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065070 NCBI Caenorhabditis elegans B0524.4 (B0524.4) mRNA, complete cds. 11/11 None
SNAP00000041790 ENSEMBL cdna:SNAP chromosome:CEL140:III:1883027:1887285:-1 11/11 None
GENEFINDER00000041794 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1883198:1887285:-1 11/11 None
B0524.4 ENSEMBL cdna:known chromosome:CEL140:III:1883596:1886207:-1 gene:B0524.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1883595-1886207(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0524.4
Entrez Gene 182026 Entrez gene
SwissProt Q9N600 EMBL-EBI
WormBase CE20466 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39749 Hypothetical protein B0524.4 [Caenorhabditis elegans] ref|NP_497471.1| B0524.4 [Caenorhabditis elegans] 0.0
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 2.0E-62
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 1.0E-61
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 1.0E-55
blast AAK29876 Hypothetical protein Y22D7AR.12 [Caenorhabditis elegans] ref|NP_497451.1| Y22D7AR.12 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.0E-20
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.0E-20
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.0E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000041790 1 802-824
GENEFINDER00000041794 1 13-30
Sequence
Target Sequence 
>C. ELEGANS:180782_AT
ttaaatcctcattcgctgcgtattatcgacaatttggtgaacacagttatctttagctcc
aagcttgatgtggaggatcagaagagaattgcagatctgagtcggactactgcagaggtt
gagacgatgatatcatctctggacacattcaaggggaaggtgaagccaatcacttcggtt
acactcgctggatattcgaattttttcgatcaggctcaaagtgtggagggtatcagtgct
gatcttctgtccacaattgcttcggtgaccaagcttgatcgtcttctgccaactgcaaag
ttcagtagcttgctcatttatctcaaggatttggatgagatgggtttggaattttcgaga
ttttccaaggatgtggccgcggctggaaagggtacattaaaggagctggacgcatttttc
gtggctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAATCCTCATTCGCTGCGTATTA 695 683 1744 Antisense
GTGAACACAGTTATCTTTAGCTCCA 136 481 1780 Antisense
GAAGCCAATCACTTCGGTTACACTC 189 345 1905 Antisense
TATCAGTGCTGATCTTCTGTCCACA 685 657 1974 Antisense
CTGTCCACAATTGCTTCGGTGACCA 469 239 1990 Antisense
CGGTGACCAAGCTTGATCGTCTTCT 621 243 2006 Antisense
ATCGTCTTCTGCCAACTGCAAAGTT 21 37 2021 Antisense
GTTCAGTAGCTTGCTCATTTATCTC 171 445 2043 Antisense
GATTTTCCAAGGATGTGGCCGCGGC 570 427 2102 Antisense
TGGCCGCGGCTGGAAAGGGTACATT 553 543 2117 Antisense
GAGCTGGACGCATTTTTCGTGGCTT 60 387 2146 Antisense
Sequence Source Affymetrix Proprietary Database