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[180781_s_at]

Description B0379.3B /REP_DB=WormBase Gene ID /WP=CE07726 /TR=Q9U3S5 /GB=CAB54187.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 459.6
(3)
P 		258.4
(-2.7)
P 		388
(1)
P 		248
(-3)
P 		212
B 462.5
(3)
P 		277.5
(-3)
P 		313
(-1.8)
P 		303.6
(-2.2)
P 		185
C 491.7
(3)
P 		327.8
(-1.1)
P 		386.5
(0.4)
P 		252.7
(-3)
P 		239
avr 471.3
(3) 		287.9
(-2.4) 		362.5
(-0.2) 		268.1
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 468.9
(0.2)
P 		572.1
(1.5)
P 		216.1
(-3)
P 		468.1
(0.2)
P 		477.7
(0.3)
P 		693.6
(3)
P 		478
B 350.2
(-1.7)
P 		421.2
(0.3)
P 		302.1
(-3)
P 		450.9
(1.1)
P 		382.9
(-0.7)
P 		517.5
(3)
P 		215
C 645.9
(3)
P 		408.5
(-2.8)
P 		581
(1.4)
P 		399.8
(-3)
P 		562.4
(1)
P 		559.9
(0.9)
P 		246
avr 488.3
(0.3) 		467.3
(-0.3) 		366.4
(-3) 		439.6
(-1) 		474.3
(-0.1) 		590.3
(3) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 167.4
(3)
P 		56.1
(-2.1)
P 		101.4
(-0)
P 		36.3
(-3)
P 		131
B 147.5
(3)
P 		68.5
(-2.7)
P 		72.5
(-2.4)
P 		64.7
(-3)
P 		83
C 162.8
(3)
P 		94.2
(-0.4)
P 		134.7
(1.6)
P 		42.6
(-3)
P 		120
avr 159.2
(3) 		72.9
(-1.7) 		102.9
(-0) 		47.9
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 86.4
(-1.5)
P 		203.5
(3)
P 		47.1
(-3)
P 		118.7
(-0.3)
P 		144.2
(0.7)
P 		168.9
(1.7)
P 		156
B 121.8
(-0.6)
P 		140.2
(0.4)
P 		73.4
(-3)
P 		119.4
(-0.7)
P 		155.6
(1.1)
P 		193
(3)
P 		120
C 239.4
(3)
P 		124.6
(-1.3)
P 		147.9
(-0.5)
P 		80.4
(-3)
P 		182
(0.8)
P 		187.4
(1)
P 		159
avr 149.2
(0.8) 		156.1
(1.3) 		89.5
(-3) 		106.2
(-1.9) 		160.6
(1.6) 		183.1
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180781_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1730
Sequence Type Exemplar sequence
Representative Public ID B0379.3B NCBI
Target Description B0379.3B /REP_DB=WormBase Gene ID /WP=CE07726 /TR=Q9U3S5 /GB=CAB54187.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060260(11), NM_060259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060260 NCBI Caenorhabditis elegans MUTator family member (mut-16) (mut-16) mRNA, complete cds. 11/11 None
NM_060259 NCBI Caenorhabditis elegans MUTator family member (mut-16) (mut-16) mRNA, complete cds. 11/11 None
SNAP00000021509 ENSEMBL cdna:SNAP chromosome:CEL140:I:10088282:10093639:1 11/11 None
GENEFINDER00000021515 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10088282:10093639:1 11/11 None
B0379.3b ENSEMBL cdna:known chromosome:CEL140:I:10088279:10093822:1 gene:B0379.3 11/11 None
B0379.3a ENSEMBL cdna:known chromosome:CEL140:I:10088282:10093639:1 gene:B0379.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10088212-10093570(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0379.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54187 Hypothetical protein B0379.3b [Caenorhabditis elegans] ref|NP_492661.2| MUTator family member (mut-16) [Caenorhabditis elegans] 0.0
blast CAB05895 Hypothetical protein B0379.3a [Caenorhabditis elegans] ref|NP_492660.2| MUTator family member (mut-16) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180781_S_AT
cgacttcttccgatccaaattatggatgtaatccacaattcaatcattatggcagtagat
cagtttatcatgaagatcattcatcacaaagaagaagatcacctgatcagtttccaccaa
atcctccagaatacgatccacacggaaacttcaaacttgctgattatgaaagagatcgaa
tgacagtcggatacagtcaaaatccacatcaatttgaccatcacggaagtcatatgcctc
atcagtcacaaccacaaggatatgacaattttaacggaaattctgcgccgtactttaata
aaaacggaggacaatcaaaccatcaaccggaagctcaaagatcttttagtgttctctctt
cgaatcgtcagccatcgaacagggaattaatatttcaagatggaattgagaaggaattga
gagatataattctccgttatcgaagcatgaacttgacagtattgacagtacaagaactga
gaacagaagtgagcagacgtcctgctattcctcggtacattgatattgtccaatatatta
gagattcttcatcggttgctatagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACTTCTTCCGATCCAAATTATGG 699 251 2420 Antisense
ATCACCTGATCAGTTTCCACCAAAT 514 25 2517 Antisense
AAATCCTCCAGAATACGATCCACAC 227 119 2538 Antisense
GACCATCACGGAAGTCATATGCCTC 376 383 2635 Antisense
TCATATGCCTCATCAGTCACAACCA 6 621 2649 Antisense
GAAATTCTGCGCCGTACTTTAATAA 400 363 2696 Antisense
GGAGGACAATCAAACCATCAACCGG 596 515 2725 Antisense
CTTTTAGTGTTCTCTCTTCGAATCG 89 219 2762 Antisense
AGTGAGCAGACGTCCTGCTATTCCT 630 59 2907 Antisense
TCCTGCTATTCCTCGGTACATTGAT 387 593 2919 Antisense
GATTCTTCATCGGTTGCTATAGTGG 564 431 2962 Antisense
Sequence Source Affymetrix Proprietary Database