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[180780_at]

Description W10C4.1 /REP_DB=WormBase Gene ID /WP=CE21286 /TR=Q9N5A3 /GB=AAF39993.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 91
(-1.5)
A 		114.6
(1.6)
A 		79.7
(-3)
A 		125.2
(3)
A 		46
B 34.9
(-3)
A 		120.8
(2.8)
A 		52.8
(-1.8)
A 		124.2
(3)
M 		89
C 49.6
(-3)
A 		120.3
(2.3)
A 		112.9
(1.8)
A 		129
(3)
M 		79
avr 58.5
(-3) 		118.6
(2.3) 		81.8
(-0.9) 		126.1
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 68.5
(-0.9)
A 		81.6
(0.4)
A 		46.9
(-3)
A 		60
(-1.7)
A 		89.7
(1.2)
A 		108.7
(3)
A 		62
B 86.3
(1.7)
A 		97.7
(3)
A 		50.1
(-2.6)
A 		67.9
(-0.5)
A 		46.9
(-3)
A 		97.2
(2.9)
A 		51
C 58.3
(-3)
A 		58.5
(-3)
A 		75.5
(0.6)
A 		74.6
(0.4)
A 		63.9
(-1.8)
A 		87.3
(3)
A 		29
avr 71
(-1) 		79.3
(0.3) 		57.5
(-3) 		67.5
(-1.5) 		66.8
(-1.6) 		97.7
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 33.1
(3)
A 		24.9
(-0.3)
A 		20.8
(-2)
A 		18.3
(-3)
A 		15
B 11.1
(-3)
A 		29.8
(3)
A 		12.2
(-2.6)
A 		26.5
(1.9)
M 		19
C 16.4
(-3)
A 		34.6
(1.8)
A 		39.3
(3)
A 		21.7
(-1.6)
M 		23
avr 20.2
(-3) 		29.8
(3) 		24.1
(-0.6) 		22.2
(-1.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12.6
(-2.2)
A 		29
(3)
A 		10.2
(-3)
A 		15.2
(-1.4)
A 		27.1
(2.4)
A 		26.5
(2.2)
A 		19
B 30
(1.5)
A 		32.5
(2.1)
A 		12.2
(-3)
A 		18
(-1.6)
A 		19.1
(-1.3)
A 		36.2
(3)
A 		24
C 21.6
(-0.2)
A 		17.9
(-1.8)
A 		19.2
(-1.2)
A 		15
(-3)
A 		20.7
(-0.6)
A 		29.2
(3)
A 		14
avr 21.4
(-0.3) 		26.5
(1.5) 		13.9
(-3) 		16.1
(-2.2) 		22.3
(0) 		30.6
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8303
Sequence Type Exemplar sequence
Representative Public ID W10C4.1 NCBI
Target Description W10C4.1 /REP_DB=WormBase Gene ID /WP=CE21286 /TR=Q9N5A3 /GB=AAF39993.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064776
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000004120 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:201752:207976:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064776 8/11 Cross Hyb Matching Probes None
W10C4.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:202466-206010(-) 91.7 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE69513 Hypothetical protein CBG15722 [Caenorhabditis briggsae] 4.0E-62
blast AAF39993 Hypothetical protein W10C4.1 [Caenorhabditis elegans] ref|NP_497177.2| W10C4.1 [Caenorhabditis elegans] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.0E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004120 4 162-184,224-246,296-318,338-360
Sequence
Target Sequence 
>C. ELEGANS:180780_AT
gtggcaaactgacaaccggcctactgacattgctgacatgttgtgccgcattgacattct
acaatcatgtcagccatcactgcttcatcaagtcgttttgcaacgcaacacagattatgg
ccgtctgtttggacgtcaatttggatgtatggcccaacaaccgtacaaacatctcaccgc
cggcgttgcgtacctacgtggcggcgacgcgtgccgccaacgcggctctcgtagtgtttc
tgccgatgattctcctcgtcgtgctcaatatgatgctcttgtactatattcttcagcaac
gaaccgagcaccgagtggccgttacggtatgtgccgtggtgacgtcattcacaataactc
aggcaccgtccgctgtggtgttaactgtaaattcgctgctcaaggagcggctcgacgcgc
attggtaccacatgacaacaattacctcattcttggttgtaatcggaaaaagtttgaatt
tcgtcgttttctgcctatcatcttccagttttcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCAAACTGACAACCGGCCTACT 428 491 246 Antisense
TGTTGTGCCGCATTGACATTCTACA 523 563 284 Antisense
CAATCATGTCAGCCATCACTGCTTC 543 181 307 Antisense
CGTAGTGTTTCTGCCGATGATTCTC 393 247 475 Antisense
CTCCTCGTCGTGCTCAATATGATGC 110 235 497 Antisense
GAGCACCGAGTGGCCGTTACGGTAT 397 387 551 Antisense
GTATGTGCCGTGGTGACGTCATTCA 485 455 572 Antisense
ATTCACAATAACTCAGGCACCGTCC 482 11 592 Antisense
GACGCGCATTGGTACCACATGACAA 183 381 659 Antisense
TTGAATTTCGTCGTTTTCTGCCTAT 120 705 719 Antisense
TGCCTATCATCTTCCAGTTTTCGGA 240 585 737 Antisense
Sequence Source Affymetrix Proprietary Database