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[180779_s_at]

Description Y51H4A.4 /REP_DB=WormBase Gene ID /WP=CE22330 /TR=Q9NAE4 /GB=CAB61136.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 56      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 25.7
(-3)
A 		68.5
(1.3)
A 		84.9
(3)
A 		39.6
(-1.6)
A 		59
B 20.7
(-1.8)
A 		31.8
(-0.3)
A 		55.7
(3)
A 		12.4
(-3)
A 		43
C 28.5
(-2.3)
A 		55.5
(3)
A 		50.3
(2)
A 		25.1
(-3)
A 		30
avr 25
(-3) 		51.9
(1.2) 		63.6
(3) 		25.7
(-2.9) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 64.6
(1.5)
A 		9.6
(-3)
A 		46.1
(-0)
A 		20
(-2.2)
A 		42.2
(-0.3)
A 		83.4
(3)
P 		74
B 26.6
(-0.4)
A 		45.6
(2.4)
A 		9.5
(-3)
A 		13.5
(-2.4)
A 		21.7
(-1.2)
A 		49.3
(3)
P 		40
C 36.3
(0.3)
A 		9.5
(-2.8)
A 		8.1
(-3)
A 		9.8
(-2.8)
A 		47.2
(1.6)
A 		59
(3)
M 		51
avr 42.5
(0.4) 		21.6
(-2.1) 		21.2
(-2.2) 		14.4
(-3) 		37
(-0.3) 		63.9
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 9.4
(-1.7)
A 		14.9
(0.3)
A 		22.2
(3)
A 		5.8
(-3)
A 		16
B 6.6
(-0.7)
A 		7.9
(0.1)
A 		12.9
(3)
A 		2.6
(-3)
A 		10
C 9.4
(-0.7)
A 		16
(2.3)
A 		17.5
(3)
A 		4.2
(-3)
A 		13
avr 8.5
(-1.1) 		12.9
(0.9) 		17.5
(3) 		4.2
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.9
(0)
A 		3.4
(-3)
A 		10
(-0.7)
A 		5.1
(-2.4)
A 		12.7
(0.3)
A 		20.3
(3)
P 		17
B 9.3
(-0.4)
A 		15.2
(1.8)
A 		2.3
(-3)
A 		3.6
(-2.5)
A 		8.8
(-0.6)
A 		18.4
(3)
P 		16
C 13.4
(0.9)
A 		2.9
(-2.7)
A 		2.1
(-3)
A 		2
(-3)
A 		15.3
(1.5)
A 		19.7
(3)
M 		18
avr 11.5
(-0) 		7.2
(-1.6) 		4.8
(-2.5) 		3.6
(-3) 		12.3
(0.3) 		19.5
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180779_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9753
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.4 NCBI
Target Description Y51H4A.4 /REP_DB=WormBase Gene ID /WP=CE22330 /TR=Q9NAE4 /GB=CAB61136.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070560 NCBI Caenorhabditis elegans Y51H4A.4 (Y51H4A.4) mRNA, complete cds. 11/11 A 
SNAP00000000178 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16503413:16505626:-1 11/11 None
GENEFINDER00000000215 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16503413:16505629:-1 11/11 None
Y51H4A.4 ENSEMBL cdna:known chromosome:CEL140:IV:16503318:16505642:-1 gene:Y51H4A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16503418-16505635(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.4
Entrez Gene 178459 Entrez gene
SwissProt Q9NAE4 EMBL-EBI
WormBase CE22330 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61136 Hypothetical protein Y51H4A.4 [Caenorhabditis elegans] ref|NP_502961.1| Y51H4A.4 [Caenorhabditis elegans] 4.0E-86
blast CAB61136 Hypothetical protein Y51H4A.4 [Caenorhabditis elegans] ref|NP_502961.1| Y51H4A.4 [Caenorhabditis elegans] 2.0E-85
blast CAE68044 Hypothetical protein CBG13661 [Caenorhabditis briggsae] 3.0E-37
blast CAE68044 Hypothetical protein CBG13661 [Caenorhabditis briggsae] 8.0E-37
blast CAF97913 unnamed protein product [Tetraodon nigroviridis] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:180779_S_AT
ctggctgcctcgagaatgtgtgattcggattctataaaggcattcaatcagatgtacgca
cagaatccgtatggagcaggagcttttgataagaactactccgcagccactgctctccca
ttttttgctcaacatttcgcgccatacgcgaatccccatgccacgtcatctttttccccg
tcatcgtcttccacgtcatccaccacgtcgtctcaaaatcagcagagtggcagcagtggg
agtaagaagaaaaaaccggttccggtgccggaaaatcaaaaggatgaggcctatctcgac
cggcgccgccgaaacaacgaagccgcccgtaaatccagagaatctcgcaagaaagtcgat
caggacaatagtgttcgtgtaacatatttggagagggaaaatcaatgcttgcgagtctac
gtccaacagctccaactacaaaacgaatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGCTGCCTCGAGAATGTGTGATT 367 241 37 Antisense
GGCATTCAATCAGATGTACGCACAG 555 537 75 Antisense
GAATCCGTATGGAGCAGGAGCTTTT 372 329 99 Antisense
TTGATAAGAACTACTCCGCAGCCAC 174 705 122 Antisense
TTTTTGCTCAACATTTCGCGCCATA 124 675 158 Antisense
CATTTCGCGCCATACGCGAATCCCC 438 213 169 Antisense
AAATCAGCAGAGTGGCAGCAGTGGG 490 117 252 Antisense
AAAGGATGAGGCCTATCTCGACCGG 635 119 315 Antisense
CGGCGCCGCCGAAACAACGAAGCCG 497 241 337 Antisense
CCGCCCGTAAATCCAGAGAATCTCG 107 263 359 Antisense
CAGCTCCAACTACAAAACGAATCGA 483 195 463 Antisense
Sequence Source Affymetrix Proprietary Database