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[180777_at]

Description Y41E3.15 /REP_DB=WormBase Gene ID /WP=CE18383 /TR=Q9U2H5 /GB=CAB63364.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 02      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 3.9
(-3)
A 		6.4
(-2.8)
A 		7.7
(-2.7)
A 		69.2
(3)
A 		65
B 15.6
(-1.5)
A 		4.3
(-3)
A 		8.1
(-2.5)
A 		48.8
(3)
A 		45
C 11.7
(-2.6)
A 		18.7
(-2)
A 		6.5
(-3)
A 		78.1
(3)
A 		72
avr 10.4
(-2.7) 		9.8
(-2.8) 		7.4
(-3) 		65.4
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 48.5
(3)
A 		3.6
(-3)
A 		8.7
(-2.3)
A 		5.1
(-2.8)
A 		8.6
(-2.3)
A 		8.9
(-2.3)
A 		45
B 6.7
(-3)
A 		9.8
(-2.6)
A 		15.4
(-1.8)
A 		35.4
(0.8)
A 		38.8
(1.3)
A 		51.8
(3)
A 		45
C 3.3
(-3)
A 		13.3
(-1.5)
A 		8.5
(-2.2)
A 		8
(-2.3)
A 		39.2
(2.5)
A 		42.3
(3)
A 		39
avr 19.5
(-0.5) 		8.9
(-3) 		10.9
(-2.5) 		16.2
(-1.3) 		28.9
(1.7) 		34.3
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.4
(-3)
A 		1.4
(-3)
A 		2
(-2.6)
A 		10.1
(3)
A 		9
B 5
(-0.5)
A 		1.1
(-3)
A 		1.9
(-2.5)
A 		10.4
(3)
A 		9
C 3.9
(-2.1)
A 		5.4
(-1.3)
A 		2.3
(-3)
A 		13.2
(3)
A 		11
avr 3.4
(-2.1) 		2.6
(-2.7) 		2.1
(-3) 		11.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.9
(3)
A 		1.3
(-3)
A 		1.9
(-2.5)
A 		1.3
(-3)
A 		2.6
(-2)
A 		2.2
(-2.3)
A 		8
B 2.3
(-3)
A 		3.3
(-2.6)
A 		3.7
(-2.5)
A 		9.4
(-0.5)
A 		15.7
(1.7)
A 		19.3
(3)
A 		17
C 1.2
(-3)
A 		4.1
(-1.7)
A 		2.2
(-2.5)
A 		1.6
(-2.8)
A 		12.7
(2.3)
A 		14.1
(3)
A 		13
avr 4.1
(-2) 		2.9
(-2.8) 		2.6
(-3) 		4.1
(-2) 		10.3
(2) 		11.9
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9752
Sequence Type Exemplar sequence
Representative Public ID Y41E3.15 NCBI
Target Description Y41E3.15 /REP_DB=WormBase Gene ID /WP=CE18383 /TR=Q9U2H5 /GB=CAB63364.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070420
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000001477 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15065828:15068880:-1 None
Y41E3.15 ENSEMBL cdna:known chromosome:CEL140:IV:15065828:15068886:-1 gene:Y41E3.15 None
NM_070420 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-48) (srt-48) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028291 2/11 Cross Hyb Matching Probes None
SNAP00000001449 3/11 Cross Hyb Matching Probes None
SNAP00000001450 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001475 3/11 Cross Hyb Matching Probes None
Y41E3.18 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15065253-15068886(-) 98.24 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-48
Ensembl Y41E3.15
Entrez Gene 189835 Entrez gene
SwissProt Q9U2H5 EMBL-EBI
WormBase CE37857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63364 Hypothetical protein Y41E3.15 [Caenorhabditis elegans] ref|NP_502821.2| Serpentine Receptor, class T family member (srt-48) [Caenorhabditis elegans] 0.0
blast CAE68178 Hypothetical protein CBG13838 [Caenorhabditis briggsae] 1.0E-116
blast CAB70255 Hypothetical protein M199.1 [Caenorhabditis elegans] ref|NP_502823.1| Serpentine Receptor, class T family member (srt-44) [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.9E-114
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.9E-114
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502821.2 7 37-59,71-93,108-130,151-173,204-223,236-258,268-290
Y41E3.15 7 37-59,71-93,108-130,151-173,204-223,236-258,268-290
GENEFINDER00000001477 8 35-57,69-91,106-128,149-171,202-221,234-256,266-288,301-323
Sequence
Target Sequence 
>C. ELEGANS:180777_AT
ggacagaagtcgaaagcctccactgcgattcttgttcaatgcataataatttgtttcttt
aacactacatgtgcactgatttacaactcttttacacttatcacaccggatccctgggtt
ttacttttaggtcagtactgttggtgtgtaaatcacggctgtccggctcttatctacatc
acaataaacgacacaattcggaaagggttccggaaattgctttttaatggaacaagagga
agtttgagttttgattgcagtttcagaatttgtcagaaaaaagtttttaacaaaagatta
ctgtttcaaacttttcgtattcatttcttttttgatgagatcataattacagccgttcca
gcgaatagaagtcctactcgtcaaaaatcgataaacaaatctctgttatcacttgataaa
acgcaagaattctctgaaacctctcaaaaattgaaaatcgacggagaaaatagaagtgaa
aatcatcgaaacgcagtgattctgtctggatattcatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAGAAGTCGAAAGCCTCCACTG 696 523 697 Antisense
GTGCACTGATTTACAACTCTTTTAC 264 481 767 Antisense
ACTCTTTTACACTTATCACACCGGA 251 101 782 Antisense
TCACACCGGATCCCTGGGTTTTACT 674 627 797 Antisense
TGTGTAAATCACGGCTGTCCGGCTC 551 555 841 Antisense
CCGGCTCTTATCTACATCACAATAA 72 267 859 Antisense
TCAAACTTTTCGTATTCATTTCTTT 235 629 1002 Antisense
ATAATTACAGCCGTTCCAGCGAATA 45 25 1039 Antisense
AGCGAATAGAAGTCCTACTCGTCAA 199 77 1056 Antisense
ACGCAAGAATTCTCTGAAACCTCTC 496 91 1117 Antisense
GTGATTCTGTCTGGATATTCATCGA 103 485 1192 Antisense
Sequence Source Affymetrix Proprietary Database