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[180776_at]

Description F11D11.1 /REP_DB=WormBase Gene ID /WP=CE15792 /TR=O62150 /GB=CAB04093.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 9
(-2.1)
A 		5
(-3)
A 		5.2
(-3)
A 		31.6
(3)
A 		27
B 12.5
(-2.6)
A 		23.7
(-0.2)
A 		10.9
(-3)
A 		38
(3)
A 		27
C 25.9
(0.9)
A 		3.7
(-2.7)
A 		2.1
(-3)
A 		38.3
(3)
A 		36
avr 15.8
(-1.1) 		10.8
(-2.1) 		6.1
(-3) 		36
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 31.5
(3)
A 		4.3
(-2.6)
A 		4.1
(-2.7)
A 		2.8
(-3)
A 		16.8
(-0.1)
A 		2.6
(-3)
A 		29
B 1.3
(-3)
A 		10.3
(2.9)
A 		2.3
(-2.3)
A 		2.3
(-2.3)
A 		3.4
(-1.6)
A 		10.4
(3)
A 		9
C 12.8
(-0.6)
A 		15.1
(-0.2)
A 		4.2
(-2.3)
A 		30.8
(3)
A 		8.1
(-1.6)
A 		0.9
(-3)
A 		30
avr 15.2
(3) 		9.9
(0.3) 		3.5
(-3) 		12
(1.4) 		9.4
(0) 		4.6
(-2.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.3
(0.8)
A 		1.1
(-3)
A 		1.4
(-2.5)
A 		4.6
(3)
A 		4
B 4
(-1.4)
A 		5.9
(0.6)
A 		2.5
(-3)
A 		8.1
(3)
A 		6
C 8.6
(3)
A 		1
(-2.8)
A 		0.7
(-3)
A 		6.5
(1.4)
A 		8
avr 5.3
(1.7) 		2.7
(-1.5) 		1.5
(-3) 		6.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 5.8
(3)
A 		1.5
(-2)
A 		0.9
(-2.7)
A 		0.7
(-2.9)
A 		5.1
(2.2)
A 		0.6
(-3)
A 		5
B 0.5
(-3)
A 		3.4
(2.1)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		1.4
(-1.4)
A 		3.9
(3)
A 		3
C 4.7
(1.5)
A 		4.6
(1.4)
A 		1.1
(-2.2)
A 		6.2
(3)
A 		2.6
(-0.7)
A 		0.3
(-3)
A 		6
avr 3.7
(3) 		3.2
(1.9) 		0.9
(-3) 		2.5
(0.4) 		3
(1.5) 		1.6
(-1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13685
Sequence Type Exemplar sequence
Representative Public ID F11D11.1 NCBI
Target Description F11D11.1 /REP_DB=WormBase Gene ID /WP=CE15792 /TR=O62150 /GB=CAB04093.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075264 NCBI Caenorhabditis elegans F11D11.1 (F11D11.1) mRNA, complete cds. 11/11 None
F11D11.1 ENSEMBL cdna:known chromosome:CEL140:V:18770328:18773297:-1 gene:F11D11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039942 3/11 Cross Hyb Matching Probes None
SNAP00000039944 5/11 Cross Hyb Matching Probes None
GENEFINDER00000039946 3/11 Cross Hyb Matching Probes None
GENEFINDER00000039949 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18770327-18773297(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11D11.1
Entrez Gene 184348 Entrez gene
SwissProt O62150 EMBL-EBI
WormBase CE15792 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04093 Hypothetical protein F11D11.1 [Caenorhabditis elegans] ref|NP_507665.1| F11D11.1 [Caenorhabditis elegans] 0.0
blast CAA16303 Hypothetical protein Y17D7B.6 [Caenorhabditis elegans] ref|NP_507666.1| Y17D7B.6 [Caenorhabditis elegans] 3.0E-55
blast CAB04098 Hypothetical protein F11D11.6 [Caenorhabditis elegans] ref|NP_507660.1| F11D11.6 [Caenorhabditis elegans] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:180776_AT
cactgactggaattgcatcactggatgaggcgaaatgggttcaagagtataaaatatcaa
ataaaacctacccagcttggattggcggtgcgcgggattgtccggaggatagtccgtgta
ccatattcaaatggaccgacggatatacaaacttgtatgatgctctgaataataatgctc
aattgactgaaagaactggtttcgataattgcttagctattcttccaccaaggaacaata
cagatgcaatcatattctcacagccttgcgtaccagaagcctattgtcaattccgaatga
ttctcatttacggatcagctactgatatctcgaacatcccaaataacacttgtccggcat
cctataaagatcttaagctatcactaacttcatcaactggagagaagtactcttggacaa
gaacacccactgggtggaaaatcacaacctgtagaactggatggaccacatttgaacggg
acgataaaacgctcgtttgcatgcaaattttcccgccgcttgaatcagacccacgcagcg
aagcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGACTGGAATTGCATCACTGGA 72 199 557 Antisense
AACCTACCCAGCTTGGATTGGCGGT 9 147 621 Antisense
GTGCGCGGGATTGTCCGGAGGATAG 626 453 644 Antisense
ATAATTGCTTAGCTATTCTTCCACC 67 27 761 Antisense
GCAATCATATTCTCACAGCCTTGCG 299 323 802 Antisense
TGCGTACCAGAAGCCTATTGTCAAT 264 583 823 Antisense
ATTCTCATTTACGGATCAGCTACTG 660 9 856 Antisense
TCAGCTACTGATATCTCGAACATCC 70 625 871 Antisense
CCCAAATAACACTTGTCCGGCATCC 593 255 894 Antisense
ATGGACCACATTTGAACGGGACGAT 185 53 1017 Antisense
ATCAGACCCACGCAGCGAAGCAATC 305 29 1080 Antisense
Sequence Source Affymetrix Proprietary Database