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[180775_s_at]

Description C06G3.9 /REP_DB=WormBase Gene ID /WP=CE07985 /TR=Q17750 /GB=AAB03137.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 74      6grp_total > 70      4grp_total > 39      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 580.8
(2)
P 		553.1
(0.7)
P 		471.1
(-3)
P 		602.5
(3)
P 		131
B 582.5
(3)
P 		502.7
(0.7)
P 		563.9
(2.5)
P 		378.7
(-3)
P 		204
C 576.9
(2.3)
P 		438.8
(-3)
P 		533.7
(0.6)
P 		595.8
(3)
P 		157
avr 580.1
(3) 		498.2
(-3) 		522.9
(-1.2) 		525.7
(-1) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 728.8
(-1)
P 		671.2
(-2.2)
P 		630.7
(-3)
P 		921.2
(3)
P 		697.8
(-1.6)
P 		692.5
(-1.7)
P 		291
B 556.3
(-1.7)
P 		498.7
(-3)
P 		648.8
(0.4)
P 		767.4
(3)
P 		523.2
(-2.5)
P 		629.5
(-0.1)
P 		269
C 632.7
(-0.6)
P 		542.3
(-2.3)
P 		826
(3)
P 		743
(1.5)
P 		503.7
(-3)
P 		655
(-0.2)
P 		322
avr 639.3
(-1.3) 		570.7
(-3) 		701.8
(0.3) 		810.5
(3) 		574.9
(-2.9) 		659
(-0.8) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 211.5
(3)
P 		120.1
(-1.4)
P 		123.1
(-1.3)
P 		88.2
(-3)
P 		123
B 185.8
(3)
P 		124.2
(-0.5)
P 		130.7
(-0.1)
P 		80.7
(-3)
P 		105
C 191
(3)
P 		126.1
(-1.3)
P 		186
(2.7)
P 		100.5
(-3)
P 		91
avr 196.1
(3) 		123.5
(-1.1) 		146.6
(0.2) 		89.8
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 134.4
(-3)
P 		238.7
(3)
P 		137.4
(-2.8)
P 		233.6
(2.7)
P 		210.6
(1.4)
P 		168.6
(-1)
P 		104
B 193.6
(-0.2)
P 		166
(-2.3)
P 		157.5
(-3)
P 		203.3
(0.6)
P 		212.6
(1.3)
P 		234.7
(3)
P 		77
C 234.5
(3)
P 		165.5
(-1.9)
P 		210.2
(1.3)
P 		149.4
(-3)
P 		163
(-2)
P 		219.3
(1.9)
P 		85
avr 187.5
(-0.1) 		190.1
(0.3) 		168.4
(-3) 		195.4
(1.1) 		195.4
(1.1) 		207.5
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180775_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9714
Sequence Type Exemplar sequence
Representative Public ID C06G3.9 NCBI
Target Description C06G3.9 /REP_DB=WormBase Gene ID /WP=CE07985 /TR=Q17750 /GB=AAB03137.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068689 NCBI Caenorhabditis elegans C06G3.9 (C06G3.9) mRNA, complete cds. 11/11 None
SNAP00000008740 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7032826:7036843:-1 11/11 None
GENEFINDER00000008750 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7032826:7036843:-1 11/11 None
C06G3.9.1 ENSEMBL cdna:known chromosome:CEL140:IV:7032700:7036843:-1 gene:C06G3.9 11/11 None
C06G3.9.2 ENSEMBL cdna:known chromosome:CEL140:IV:7032703:7036845:-1 gene:C06G3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7032831-7036849(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06G3.9
Entrez Gene 177471 Entrez gene
WormBase CE07985 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252513_AT expressed protein at
CANINE:1604795_AT similar to Protein KIAA0776 cfa
CANINE_2:CFA.19698.1.S1_S_AT similar to Protein KIAA0776 cfa
CANINE_2:CFAAFFX.6092.1.S1_AT similar to Protein KIAA0776 cfa
DROSOPHILA_2:1624502_A_AT dm
DROSGENOME1:154803_AT dm
CHICKEN:GGAAFFX.11526.1.S1_S_AT similar to KIAA0776 protein gga
CHICKEN:GGAAFFX.21191.1.S1_S_AT similar to KIAA0776 protein gga
CHICKEN:GGAAFFX.9931.3.S1_S_AT similar to KIAA0776 protein gga
CHICKEN:GGAAFFX.9934.1.S1_AT similar to KIAA0776 protein gga
HU35KSUBA:RC_AA453614_I_AT KIAA0776 hs
HU35KSUBA:H88035_S_AT KIAA0776 hs
HU35KSUBA:RC_AA291269_AT KIAA0776 hs
HU35KSUBD:RC_AA435955_AT KIAA0776 hs
U133_X3P:HS.98846.0.A1_3P_AT KIAA0776 hs
U133_X3P:HS.5460.0.S2_3P_AT KIAA0776 hs
U133_X3P:HS.5460.0.S1_3P_AT KIAA0776 hs
HG-U133A_2:212633_AT KIAA0776 hs
HG-U133_PLUS_2:212633_AT KIAA0776 hs
HG-U133A:212633_AT KIAA0776 hs
HG-U133A_2:212634_AT KIAA0776 hs
HG-U133_PLUS_2:212634_AT KIAA0776 hs
HG-U133A:212634_AT KIAA0776 hs
HG-U133_PLUS_2:238291_AT KIAA0776 hs
HG-U133B:238291_AT KIAA0776 hs
HG-U95AV2:36474_AT KIAA0776 hs
HG-U95B:49793_AT KIAA0776 hs
HG-U133_PLUS_2:238311_AT KIAA0776 hs
HG-U133B:238311_AT KIAA0776 hs
HG-U95D:81906_AT KIAA0776 hs
U133_X3P:HS.160870.0.A1_3P_AT KIAA0776 hs
U133_X3P:HS.160870.0.A1_3P_X_AT KIAA0776 hs
MG-U74BV2:112265_R_AT RIKEN cDNA 1810074P20 gene mm
MG-U74BV2:111081_AT RIKEN cDNA 1810074P20 gene mm
MG-U74BV2:112264_I_AT RIKEN cDNA 1810074P20 gene mm
MG-U74BV2:163196_I_AT RIKEN cDNA 1810074P20 gene mm
MOE430B:1429008_AT RIKEN cDNA 1810074P20 gene mm
MOUSE430_2:1429008_AT RIKEN cDNA 1810074P20 gene mm
MU19KSUBA:TC25105_AT RIKEN cDNA 1810074P20 gene (1810074P20Rik), mRNA mm
RG-U34B:RC_AA964653_AT similar to RIKEN cDNA 1810074P20 (predicted) rn
RAE230B:1382526_AT similar to RIKEN cDNA 1810074P20 (predicted) rn
RAT230_2:1382526_AT similar to RIKEN cDNA 1810074P20 (predicted) rn
RAE230A:1376896_AT Similar to RIKEN cDNA 1810074P20 (predicted) rn
RAT230_2:1376896_AT Similar to RIKEN cDNA 1810074P20 (predicted) rn
RG-U34C:RC_AI227699_AT Similar to RIKEN cDNA 1810074P20 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB03137 Hypothetical protein C06G3.9 [Caenorhabditis elegans] ref|NP_501090.1| C06G3.9 [Caenorhabditis elegans] 0.0
blast CAE57452 Hypothetical protein CBG00415 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180775_S_AT
cttggctcagatcttcggcaatatcttctgaaaacagttggaaatgaaattgcattggcg
ttgctttcatatgttatgggagtagataatgcacaccaattgaaggaaaaacagcgagaa
gaaacaattgaaaaccttcctgaaatgctcagagatccgattcgatcagtgtttgcgtcg
ctgaaatctacagatgatgatgctttggataaatttcatgatgctgtttataattgttcg
gctccaagtgcaacttcgttggcactgaaaaaagtcgacaagaaaggaagagccgaagtt
ggagctaaaattacagcggaacttcatgagcaactttgttctcaaacggagccagcaaca
actcttcttctgtctgttctttatattttagccaaggctggacgcccaacaactgccagc
ggaaagtttgtttctcaacttgttgctcaaattaaggatttatgccccgagaatgtcttc
gacctacttcaggcatgccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGGCTCAGATCTTCGGCAATATC 11 219 1621 Antisense
ATTGCATTGGCGTTGCTTTCATATG 200 7 1669 Antisense
GATTCGATCAGTGTTTGCGTCGCTG 407 433 1779 Antisense
GGCTCCAAGTGCAACTTCGTTGGCA 710 537 1860 Antisense
AGCGGAACTTCATGAGCAACTTTGT 46 81 1935 Antisense
AACGGAGCCAGCAACAACTCTTCTT 23 145 1965 Antisense
TCTTCTTCTGTCTGTTCTTTATATT 339 617 1983 Antisense
TTTAGCCAAGGCTGGACGCCCAACA 106 505 2007 Antisense
CGCCCAACAACTGCCAGCGGAAAGT 332 255 2023 Antisense
TTATGCCCCGAGAATGTCTTCGACC 214 681 2080 Antisense
TTCGACCTACTTCAGGCATGCCAAA 294 695 2098 Antisense
Sequence Source Affymetrix Proprietary Database