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[180774_at]

Description F54B11.8 /REP_DB=WormBase Gene ID /WP=CE05932 /TR=Q20746 /GB=CAA94143.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 158.7
(-3)
A 		234.6
(-0.5)
A 		214.2
(-1.2)
A 		338.8
(3)
A 		180
B 190.5
(-3)
A 		207.6
(-1.3)
A 		235
(1.3)
A 		251.9
(3)
A 		61
C 159.6
(-3)
A 		169.2
(-2.6)
A 		200.4
(-1.4)
P 		315.5
(3)
P 		156
avr 169.6
(-3) 		203.8
(-1.5) 		216.5
(-0.9) 		302.1
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 227.2
(3)
A 		167.8
(-2.7)
A 		173.7
(-2.1)
A 		165.3
(-2.9)
A 		197.6
(0.2)
A 		164.4
(-3)
A 		63
B 162.6
(-2.7)
A 		158.9
(-3)
A 		225.3
(3)
A 		198.1
(0.5)
A 		224.9
(3)
A 		217.3
(2.3)
P 		66
C 160.6
(-2.7)
A 		240
(1.5)
A 		154.1
(-3)
A 		267.7
(3)
A 		216.9
(0.3)
A 		169.8
(-2.2)
A 		114
avr 183.5
(-3) 		188.9
(-1.9) 		184.4
(-2.8) 		210.4
(2.5) 		213.1
(3) 		183.8
(-2.9) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 57.8
(3)
A 		50.9
(-2)
A 		56
(1.7)
A 		49.6
(-3)
A 		8
B 60.8
(3)
A 		51.3
(-3)
A 		54.5
(-1)
A 		53.7
(-1.5)
A 		10
C 52.8
(-1.8)
A 		48.6
(-3)
A 		69.8
(3)
P 		53.2
(-1.7)
P 		21
avr 57.1
(1.2) 		50.3
(-3) 		60.1
(3) 		52.2
(-1.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 41.9
(-1.9)
A 		59.7
(3)
A 		37.8
(-3)
A 		41.9
(-1.9)
A 		59.6
(3)
A 		40
(-2.4)
A 		22
B 56.6
(-2.4)
A 		52.9
(-2.9)
A 		54.7
(-2.7)
A 		52.5
(-3)
A 		91.4
(3)
A 		81
(1.4)
P 		39
C 59.5
(0.6)
A 		73.2
(3)
A 		39.2
(-3)
A 		53.8
(-0.4)
A 		70.2
(2.5)
A 		56.9
(0.1)
A 		34
avr 52.7
(-1.2) 		61.9
(0.6) 		43.9
(-3) 		49.4
(-1.9) 		73.7
(3) 		59.3
(0.1) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17934
Sequence Type Exemplar sequence
Representative Public ID F54B11.8 NCBI
Target Description F54B11.8 /REP_DB=WormBase Gene ID /WP=CE05932 /TR=Q20746 /GB=CAA94143.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077878(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077878 NCBI Caenorhabditis elegans F54B11.8 (F54B11.8) mRNA, complete cds. 11/11 None
SNAP00000008293 ENSEMBL cdna:SNAP chromosome:CEL140:X:13602906:13603837:-1 10/11 None
GENEFINDER00000008297 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13602906:13603837:-1 10/11 None
F54B11.8 ENSEMBL cdna:known chromosome:CEL140:X:13602119:13603837:-1 gene:F54B11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13602118-13603837(-) 86.63 100.0
Public Domain and Genome References
Gene Title
Ensembl F54B11.8
Entrez Gene 186215 Entrez gene
SwissProt Q20746 EMBL-EBI
WormBase CE05932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94143 Hypothetical protein F54B11.8 [Caenorhabditis elegans] ref|NP_510279.1| F54B11.8 [Caenorhabditis elegans] 5.0E-99
blast CAA94143 Hypothetical protein F54B11.8 [Caenorhabditis elegans] ref|NP_510279.1| F54B11.8 [Caenorhabditis elegans] 4.0E-64
blast CAA94143 Hypothetical protein F54B11.8 [Caenorhabditis elegans] ref|NP_510279.1| F54B11.8 [Caenorhabditis elegans] 2.0E-60
blast CAE63112 Hypothetical protein CBG07408 [Caenorhabditis briggsae] 8.0E-17
blast CAE63112 Hypothetical protein CBG07408 [Caenorhabditis briggsae] 1.0E-16
blast CAE63112 Hypothetical protein CBG07408 [Caenorhabditis briggsae] 1.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510279.1 1 155-177
F54B11.8 1 155-177
Sequence
Target Sequence 
>C. ELEGANS:180774_AT
gttcaaaccctccaaacactggacaacgagaacaagctcaaccaactgattatcccgtca
acccagcaccgttcatctctaactgtgtatgctgttggaaaaatttcgattctttcaaga
tcgccatcctgaacgcagcggccagagctcgagcaacgggaaacattcgttacgacagtc
gcatgaccgtctactctcatccggccacactccaatgtgttgattgtgaggaaggagtca
aaaagcgcttcacccagctcttgagttcgatgtataaaatctcaaaggattccgagggat
acatcaatctcgactgcactcaaaccgctgcaatgtacttgctcaaaggtacttcgccat
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAACCCTCCAAACACTGGACA 360 443 23 Antisense
TCAACCAACTGATTATCCCGTCAAC 698 631 60 Antisense
CAGCACCGTTCATCTCTAACTGTGT 623 203 86 Antisense
TTTCAAGATCGCCATCCTGAACGCA 574 671 135 Antisense
CGGCCAGAGCTCGAGCAACGGGAAA 210 241 161 Antisense
TTACGACAGTCGCATGACCGTCTAC 440 683 192 Antisense
TCCGGCCACACTCCAATGTGTTGAT 173 593 222 Antisense
AGGAGTCAAAAAGCGCTTCACCCAG 46 57 255 Antisense
GGATACATCAATCTCGACTGCACTC 399 511 319 Antisense
ACTGCACTCAAACCGCTGCAATGTA 129 99 335 Antisense
ACTTGCTCAAAGGTACTTCGCCATC 239 105 359 Antisense
Sequence Source Affymetrix Proprietary Database