[Home] | [Total List]

[180773_at]

Description C07G1.7 /REP_DB=WormBase Gene ID /WP=CE06783 /TR=Q17799 /GB=AAB00661.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 3.9
(-3)
A 		4.2
(-2.5)
A 		6.8
(2.1)
A 		7.3
(3)
A 		3
B 30.9
(-0.2)
A 		13.3
(-2.5)
A 		55.6
(3)
A 		9.7
(-3)
A 		46
C 5.6
(-2.9)
A 		6
(-2.9)
A 		4.7
(-3)
A 		63.6
(3)
A 		59
avr 13.5
(-1.2) 		7.8
(-3) 		22.4
(1.6) 		26.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8.8
(-1.8)
A 		5.1
(-3)
A 		14.5
(0.1)
A 		6.7
(-2.5)
A 		23.3
(3)
A 		20.9
(2.2)
A 		18
B 5.6
(-3)
A 		9.1
(-2.2)
A 		6.7
(-2.7)
A 		27.7
(2)
A 		31.9
(3)
A 		24
(1.2)
A 		26
C 3.7
(-2.7)
A 		21.9
(1.8)
A 		8.7
(-1.4)
A 		7.9
(-1.6)
A 		2.3
(-3)
A 		26.6
(3)
A 		24
avr 6
(-3) 		12
(-1) 		10
(-1.7) 		14.1
(-0.3) 		19.2
(1.4) 		23.8
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.4
(0.3)
A 		0.9
(-3)
A 		1.8
(3)
A 		1.1
(-1.7)
A 		1
B 9.9
(1.3)
A 		3.3
(-2.3)
A 		12.9
(3)
A 		2.1
(-3)
A 		11
C 1.8
(-2.9)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		10.7
(3)
A 		9
avr 4.4
(1.2) 		2
(-3) 		5.4
(3) 		4.6
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.6
(-3)
A 		1.8
(-2.8)
A 		3.2
(-1.2)
A 		1.7
(-2.9)
A 		7
(3)
A 		5.1
(0.9)
A 		5
B 1.9
(-2.8)
A 		3
(-2.3)
A 		1.6
(-3)
A 		7.3
(0)
A 		12.9
(3)
A 		9
(0.9)
A 		11
C 1.4
(-2.5)
A 		6.7
(1.4)
A 		2.2
(-1.9)
A 		1.6
(-2.3)
A 		0.7
(-3)
A 		8.9
(3)
A 		8
avr 1.6
(-3) 		3.8
(-0.8) 		2.3
(-2.3) 		3.5
(-1.1) 		6.9
(2.2) 		7.7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9710
Sequence Type Exemplar sequence
Representative Public ID C07G1.7 NCBI
Target Description C07G1.7 /REP_DB=WormBase Gene ID /WP=CE06783 /TR=Q17799 /GB=AAB00661.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068977 NCBI Caenorhabditis elegans C07G1.7 (C07G1.7) mRNA, complete cds. 11/11 None
SNAP00000020466 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8210935:8211809:-1 11/11 None
GENEFINDER00000020470 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8210935:8211809:-1 11/11 None
C07G1.7 ENSEMBL cdna:known chromosome:CEL140:IV:8210935:8211809:-1 gene:C07G1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8210940-8211815(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07G1.7
Entrez Gene 182378 Entrez gene
SwissProt Q17799 EMBL-EBI
WormBase CE06783 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00661 Hypothetical protein C07G1.7 [Caenorhabditis elegans] ref|NP_501378.1| C07G1.7 [Caenorhabditis elegans] 2.0E-95
blast CAB70252 Hypothetical protein M199.2 [Caenorhabditis elegans] ref|NP_502824.1| M199.2 [Caenorhabditis elegans] 7.0E-17
blast CAB54365 Hypothetical protein Y105C5B.19 [Caenorhabditis elegans] ref|NP_502908.1| Y105C5B.19 [Caenorhabditis elegans] 7.0E-16
Sequence
Target Sequence 
>C. ELEGANS:180773_AT
gatgatgatcgtctacaggctcaaaaggtgaaacttacagagccagaagatttcgctcac
accggaaatcttacagttaaccaagatgtgaaacttgaaaagccggaagaagtgcgtcgt
ccaacaaaagctgaagaagcttcaaccgtagttcttcttgactcctcgtcgacctcttca
tcttcttcttcttccaatcagaacatgagatcaacttgtgaaccaacaaagtcgagaccg
gaattgacacgagatggcatgtggtcgccacttggcttcgcaaaaacctttttgtacgat
tacgaacgaggtgttcctttcgatagagaaacttgtgaggagaatatcaaaattctccaa
agagaggacagagatgtcgactatcgtgaatttctcacaatggcagagaagtttaatgag
gaggggcagtctttatgggcaagagcatgtgttaacatggcggcatccactcatcagatg
aacgagaacctcagaaagatcaggcagctcgagcgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATGATCGTCTACAGGCTCAAA 134 411 79 Antisense
GAGCCAGAAGATTTCGCTCACACCG 498 385 118 Antisense
CGCTCACACCGGAAATCTTACAGTT 276 255 132 Antisense
GCCGGAAGAAGTGCGTCGTCCAACA 695 275 180 Antisense
TCAACCGTAGTTCTTCTTGACTCCT 483 629 220 Antisense
CGAGATGGCATGTGGTCGCCACTTG 551 249 328 Antisense
GAACGAGGTGTTCCTTTCGATAGAG 660 347 382 Antisense
GAGGAGGGGCAGTCTTTATGGGCAA 692 401 496 Antisense
TGTGTTAACATGGCGGCATCCACTC 371 555 526 Antisense
GCGGCATCCACTCATCAGATGAACG 508 293 538 Antisense
GAAAGATCAGGCAGCTCGAGCGTAC 370 359 572 Antisense
Sequence Source Affymetrix Proprietary Database