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[180772_at]

Description T06E6.13 /REP_DB=WormBase Gene ID /WP=CE18215 /TR=O62364 /GB=CAB03323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 1.3
(-3)
A 		4.2
(1)
A 		4.8
(1.9)
A 		5.6
(3)
A 		4
B 2.3
(-2.8)
A 		27.3
(3)
A 		1.4
(-3)
A 		10.2
(-1)
A 		26
C 3.6
(-2)
A 		9.9
(3)
A 		2.4
(-3)
A 		4
(-1.7)
A 		8
avr 2.4
(-3) 		13.8
(3) 		2.9
(-2.7) 		6.6
(-0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 2.9
(-3)
A 		7.6
(-2.2)
A 		16.1
(-0.7)
A 		6.4
(-2.4)
A 		3.1
(-3)
A 		37.8
(3)
A 		35
B 11.6
(-1)
A 		18.4
(0.8)
A 		26.9
(3)
A 		10.8
(-1.3)
A 		4.2
(-3)
A 		8.6
(-1.8)
A 		23
C 4
(-3)
A 		15.5
(0.8)
A 		9.9
(-1)
A 		16.2
(1)
A 		22.1
(3)
A 		16.5
(1.1)
A 		18
avr 6.2
(-3) 		13.8
(0.1) 		17.6
(1.6) 		11.1
(-1) 		9.8
(-1.5) 		21
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.5
(-3)
A 		0.9
(0.4)
A 		1.2
(3)
A 		0.8
(-0.4)
A 		1
B 0.7
(-2.6)
A 		6.7
(3)
A 		0.3
(-3)
A 		2.2
(-1.2)
A 		6
C 1.2
(-1.6)
A 		2.8
(3)
A 		0.8
(-2.7)
A 		0.7
(-3)
A 		2
avr 0.8
(-3) 		3.5
(3) 		0.8
(-3) 		1.2
(-2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.7
(-1.5)
A 		3.5
(-0.9)
A 		1.6
(-2.2)
A 		0.9
(-2.7)
A 		9.2
(3)
A 		9
B 4
(-0.1)
A 		6.1
(2.5)
A 		6.5
(3)
A 		2.9
(-1.5)
A 		1.7
(-3)
A 		3.2
(-1.1)
A 		5
C 1.5
(-3)
A 		4.7
(0.4)
A 		2.5
(-1.9)
A 		3.3
(-1.1)
A 		7.2
(3)
A 		5.5
(1.2)
A 		6
avr 2
(-3) 		4.5
(0.8) 		4.2
(0.3) 		2.6
(-2.1) 		3.3
(-1.1) 		6
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13646
Sequence Type Exemplar sequence
Representative Public ID T06E6.13 NCBI
Target Description T06E6.13 /REP_DB=WormBase Gene ID /WP=CE18215 /TR=O62364 /GB=CAB03323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074436 NCBI Caenorhabditis elegans T06E6.13 (T06E6.13) mRNA, complete cds. 11/11 None
SNAP00000027749 ENSEMBL cdna:SNAP chromosome:CEL140:V:15424485:15425129:-1 10/11 None
GENEFINDER00000027750 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15424259:15425799:-1 11/11 None
T06E6.13 ENSEMBL cdna:known chromosome:CEL140:V:15424259:15425129:-1 gene:T06E6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15424258-15425129(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06E6.13
Entrez Gene 188192 Entrez gene
SwissProt O62364 EMBL-EBI
WormBase CE18215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03323 Hypothetical protein T06E6.13 [Caenorhabditis elegans] ref|NP_506837.1| T06E6.13 [Caenorhabditis elegans] 1.0E-157
blast CAB03323 Hypothetical protein T06E6.13 [Caenorhabditis elegans] ref|NP_506837.1| T06E6.13 [Caenorhabditis elegans] 1.0E-119
blast CAB07182 Hypothetical protein F09C3.4 [Caenorhabditis elegans] ref|NP_493496.1| F09C3.4 [Caenorhabditis elegans] 3.0E-79
blast CAB07182 Hypothetical protein F09C3.4 [Caenorhabditis elegans] ref|NP_493496.1| F09C3.4 [Caenorhabditis elegans] 6.0E-69
blast CAB07182 Hypothetical protein F09C3.4 [Caenorhabditis elegans] ref|NP_493496.1| F09C3.4 [Caenorhabditis elegans] 2.0E-54
blast CAB04556 Hypothetical protein K03D7.7 [Caenorhabditis elegans] ref|NP_507432.1| K03D7.7 [Caenorhabditis elegans] 1.0E-26
blast CAB04556 Hypothetical protein K03D7.7 [Caenorhabditis elegans] ref|NP_507432.1| K03D7.7 [Caenorhabditis elegans] 1.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-39
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-28
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.6E-39
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.2E-11
Sequence
Target Sequence 
>C. ELEGANS:180772_AT
agcccaaacgttcaattgtctctgctagatctggctccaccccttcccacagtctgccac
aaaacaaatgtgaactttgttgaagacgttttcaaatcggtcaaagatttgcatctggag
aaaattaacttcaagggtatcaattatgaggaaattgacactattttacgacacctcaaa
acaggagttctaaaggaaatatcgtttgattacaaaatcactaattcaaccataattcct
ccaattggagatatggtatatttggagcagtggaaaaatgctgagaatctttgtattcac
tcacacataagtctcggatcacttctcgaccatatttctcatttccatacgattgatatt
ttatgccacacattcagcaggcttcaaattcttcaattgcaaaaaattattgacacatcg
aaaacaatgagaaaatgtgtattccgaggacccataaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCCAAACGTTCAATTGTCTCTGC 596 81 244 Antisense
CAATTGTCTCTGCTAGATCTGGCTC 611 179 256 Antisense
TCCCACAGTCTGCCACAAAACAAAT 657 597 288 Antisense
AATTGACACTATTTTACGACACCTC 653 177 396 Antisense
ACTAATTCAACCATAATTCCTCCAA 288 97 463 Antisense
GAATCTTTGTATTCACTCACACATA 50 329 528 Antisense
ACATAAGTCTCGGATCACTTCTCGA 539 105 548 Antisense
TTCTCGACCATATTTCTCATTTCCA 459 693 566 Antisense
TATGCCACACATTCAGCAGGCTTCA 690 657 605 Antisense
TTCAGCAGGCTTCAAATTCTTCAAT 670 683 616 Antisense
GTGTATTCCGAGGACCCATAAACCT 438 485 680 Antisense
Sequence Source Affymetrix Proprietary Database