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[180771_at]

Description C35E7.6 /REP_DB=WormBase Gene ID /WP=CE17519 /TR=O61770 /GB=AAC17522.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1.7
(-3)
A 		4
(-2.6)
A 		2.2
(-2.9)
A 		33.3
(3)
A 		32
B 1.8
(-2.8)
A 		5.2
(3)
A 		1.7
(-3)
A 		2.3
(-2)
A 		4
C 2.7
(-2.8)
A 		3.3
(-2.7)
A 		1.8
(-3)
A 		28.1
(3)
A 		26
avr 2.1
(-2.9) 		4.2
(-2.3) 		1.9
(-3) 		21.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.1
(3)
A 		2.2
(-1.2)
A 		1.4
(-3)
A 		1.8
(-2.1)
A 		3.6
(1.9)
A 		1.5
(-2.8)
A 		3
B 4.4
(3)
A 		2.3
(-2)
A 		1.9
(-3)
A 		3.3
(0.4)
A 		2.6
(-1.3)
A 		2.2
(-2.3)
A 		3
C 1.7
(-2.9)
A 		3.3
(-1.8)
A 		1.8
(-2.9)
A 		2.8
(-2.1)
A 		1.6
(-3)
A 		9.8
(3)
A 		8
avr 3.4
(0.6) 		2.6
(-1.1) 		1.7
(-3) 		2.6
(-1.1) 		2.6
(-1.1) 		4.5
(3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.6
(-3)
A 		0.9
(-2.6)
A 		0.6
(-3)
A 		4.9
(3)
A 		4
B 0.6
(-1.7)
A 		1.3
(3)
A 		0.4
(-3)
A 		0.5
(-2.3)
A 		1
C 0.9
(-2.6)
A 		1
(-2.4)
A 		0.6
(-3)
A 		4.7
(3)
A 		4
avr 0.7
(-2.6) 		1.1
(-1.8) 		0.5
(-3) 		3.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.8
(0.8)
A 		0.8
(0.8)
A 		0.3
(-3)
A 		0.5
(-1.5)
A 		1.1
(3)
A 		0.4
(-2.3)
A 		1
B 1.5
(3)
A 		0.7
(-1.8)
A 		0.5
(-3)
A 		0.9
(-0.6)
A 		1.1
(0.6)
A 		0.8
(-1.2)
A 		1
C 0.6
(-2.8)
A 		1
(-1.9)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		3.3
(3)
A 		3
avr 1
(0.3) 		0.8
(-0.8) 		0.4
(-3) 		0.7
(-1.4) 		0.9
(-0.3) 		1.5
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1762
Sequence Type Exemplar sequence
Representative Public ID C35E7.6 NCBI
Target Description C35E7.6 /REP_DB=WormBase Gene ID /WP=CE17519 /TR=O61770 /GB=AAC17522.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060428 NCBI Caenorhabditis elegans C35E7.6 (C35E7.6) mRNA, complete cds. 11/11 None
GENEFINDER00000013379 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10825481:10827230:1 11/11 None
C35E7.6 ENSEMBL cdna:known chromosome:CEL140:I:10825481:10827230:1 gene:C35E7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013372 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10825411-10827161(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35E7.6
Entrez Gene 183243 Entrez gene
SwissProt O61770 EMBL-EBI
WormBase CE17519 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17522 Hypothetical protein C35E7.6 [Caenorhabditis elegans] ref|NP_492829.1| C35E7.6 [Caenorhabditis elegans] 0.0
blast CAE63902 Hypothetical protein CBG08473 [Caenorhabditis briggsae] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:180771_AT
gagtgtcttcttaccacatgacagtattctaattgctaagaacaagaaaaccaacaaaat
cggacaatatgtattcgatagatatcatcatcaatttcttgaggtagtcatgtccgacat
cgaaattaagcaagaaatgccaaatatcgcgaagcttatcaatgtgacaatgagcacaaa
aactgagcaagcaatcagtatcagatgtacccctggaattggagaactgaagaaattcca
ttataatcgggagacagcatcatttgatccaatggaagaaaaggcaattgttgagagtga
tgaggaaattcagagttttattgaagagattgaaaaaacgcaggatattgtatgcaaaaa
gatcaaagcaatcctctggttttatcataatgtgaaaccatttttggcaaagaaacttga
gaatcctgtcaagaaaaataatgactacaaacgttacgttttcaaaccagtggagccgga
agaaaaagtcgatgatgaaatggattcggtgtccgaaccagaatctgattctctctcgat
gagctcctctagtcggagcagtagccgtagcagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGTCTTCTTACCACATGACAGT 156 401 588 Antisense
TTGAGGTAGTCATGTCCGACATCGA 208 703 686 Antisense
ATGCCAAATATCGCGAAGCTTATCA 288 41 724 Antisense
GCAATCAGTATCAGATGTACCCCTG 428 321 778 Antisense
TGTACCCCTGGAATTGGAGAACTGA 429 557 793 Antisense
AATCGGGAGACAGCATCATTTGATC 164 169 832 Antisense
AAAGCAATCCTCTGGTTTTATCATA 381 123 952 Antisense
TTCGGTGTCCGAACCAGAATCTGAT 197 695 1092 Antisense
GAATCTGATTCTCTCTCGATGAGCT 304 329 1108 Antisense
TCTCGATGAGCTCCTCTAGTCGGAG 530 611 1121 Antisense
AGTCGGAGCAGTAGCCGTAGCAGCC 403 59 1138 Antisense
Sequence Source Affymetrix Proprietary Database