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[180770_at]

Description F52C6.3 /REP_DB=WormBase Gene ID /WP=CE10808 /TR=O44820 /GB=AAB94972.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 73
(-0.2)
A 		27.6
(-2)
A 		3.7
(-3)
A 		151.1
(3)
A 		147
B 9
(-2.9)
A 		11.1
(-2.8)
A 		7.2
(-3)
A 		121
(3)
P 		114
C 28.2
(-2.2)
A 		13.2
(-3)
A 		23.3
(-2.5)
A 		131.2
(3)
A 		118
avr 36.7
(-1.8) 		17.3
(-2.7) 		11.4
(-3) 		134.4
(3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 13.6
(-2.7)
A 		10.3
(-3)
A 		45.9
(0.2)
A 		32
(-1.1)
A 		23.2
(-1.9)
A 		77.9
(3)
P 		68
B 30.6
(-1.3)
A 		35.4
(-0.9)
A 		5.8
(-3)
A 		10.6
(-2.7)
A 		56.2
(0.5)
P 		91.7
(3)
P 		86
C 20.1
(-2.4)
A 		38.8
(-1.2)
A 		11.7
(-3)
A 		16.3
(-2.7)
A 		63.3
(0.5)
A 		101.2
(3)
P 		90
avr 21.4
(-2.8) 		28.2
(-2.3) 		21.1
(-2.9) 		19.6
(-3) 		47.6
(-0.6) 		90.3
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.6
(3)
A 		6
(-1.8)
A 		1
(-3)
A 		22.1
(1.9)
A 		26
B 2.9
(-2.7)
A 		2.7
(-2.8)
A 		1.7
(-3)
A 		25.8
(3)
P 		24
C 9.3
(-1.2)
A 		3.8
(-3)
A 		8.1
(-1.6)
A 		22.1
(3)
A 		18
avr 12.9
(-0.2) 		4.2
(-2.8) 		3.6
(-3) 		23.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.5
(-3)
A 		3.7
(-2.6)
A 		10
(-0.3)
A 		8.1
(-1)
A 		7
(-1.4)
A 		19
(3)
P 		17
B 10.6
(-1.3)
A 		11.8
(-1.1)
A 		1.4
(-3)
A 		2.8
(-2.7)
A 		22.8
(0.9)
P 		34.2
(3)
P 		33
C 7.5
(-2.1)
A 		11.8
(-1.3)
A 		3
(-3)
A 		3.3
(-2.9)
A 		20.5
(0.4)
A 		33.9
(3)
P 		31
avr 6.9
(-2.5) 		9.1
(-1.9) 		4.8
(-3) 		4.7
(-3) 		16.8
(-0) 		29
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4640
Sequence Type Exemplar sequence
Representative Public ID F52C6.3 NCBI
Target Description F52C6.3 /REP_DB=WormBase Gene ID /WP=CE10808 /TR=O44820 /GB=AAB94972.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061726(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061726 NCBI Caenorhabditis elegans F52C6.3 (F52C6.3) mRNA, complete cds. 10/11 None
SNAP00000005725 ENSEMBL cdna:SNAP chromosome:CEL140:II:1924769:1925635:1 11/11 None
F52C6.3 ENSEMBL cdna:known chromosome:CEL140:II:1924769:1925698:1 gene:F52C6.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005736 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1924767-1925722(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52C6.3
Entrez Gene 186085 Entrez gene
SwissProt O44820 EMBL-EBI
WormBase CE36857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94972 Hypothetical protein F52C6.3 [Caenorhabditis elegans] ref|NP_494127.2| F52C6.3 [Caenorhabditis elegans] 1.0E-105
blast AAB94972 Hypothetical protein F52C6.3 [Caenorhabditis elegans] ref|NP_494127.2| F52C6.3 [Caenorhabditis elegans] 1.0E-92
blast AAB94982 Hypothetical protein F52C6.4 [Caenorhabditis elegans] ref|NP_494126.1| F52C6.4 [Caenorhabditis elegans] 1.0E-33
blast AAB94971 Hypothetical protein F52C6.2 [Caenorhabditis elegans] ref|NP_494128.2| F52C6.2 [Caenorhabditis elegans] 3.0E-32
blast AAB94971 Hypothetical protein F52C6.2 [Caenorhabditis elegans] ref|NP_494128.2| F52C6.2 [Caenorhabditis elegans] 4.0E-32
blast AAB94982 Hypothetical protein F52C6.4 [Caenorhabditis elegans] ref|NP_494126.1| F52C6.4 [Caenorhabditis elegans] 2.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 4.3E-5
Pfam IPR000626 EMBL-EBI Ubiquitin 1.2E-24
Pfam IPR000626 EMBL-EBI Ubiquitin 4.8E-6
Sequence
Target Sequence 
>C. ELEGANS:180770_AT
aagtgaccgaagatcccatcagtgtcgaatcatcggaggtcatcggaaatctgaatgtca
aggttgccgagactcagcaagaactgcatcatgaaggaatccgaatttacgttgagaacg
ctggaagaacatgcacacttgacacttccgcctccgataccatggcaagtgtcaaggcta
aaatttgggaaaaactaagaatcctcccaaatacgcaaaaactattattggaaaactggg
acctagatttgtttagcgatcatagcactctttttgacaacagtttcgaaaacggcagta
ctcttcgtttggaaaatacggatactgttgagaccttgaagctcaagattcaggataagg
aaggtattccaccagatcaacagcgtcttatttatcaaggatcgcagctcgaggatgacc
acttcgtggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGACCGAAGATCCCATCAGTGT 342 159 221 Antisense
GATCCCATCAGTGTCGAATCATCGG 177 417 232 Antisense
ATCATCGGAGGTCATCGGAAATCTG 34 27 249 Antisense
GTCAAGGTTGCCGAGACTCAGCAAG 657 463 277 Antisense
AGAACATGCACACTTGACACTTCCG 226 73 346 Antisense
CCGCCTCCGATACCATGGCAAGTGT 409 261 368 Antisense
GAATCCTCCCAAATACGCAAAAACT 100 329 419 Antisense
GTTTAGCGATCATAGCACTCTTTTT 569 449 471 Antisense
GCACTCTTTTTGACAACAGTTTCGA 154 315 485 Antisense
CCAGATCAACAGCGTCTTATTTATC 659 271 592 Antisense
GCTCGAGGATGACCACTTCGTGGAT 637 299 627 Antisense
Sequence Source Affymetrix Proprietary Database