[Home] | [Total List]

[180769_at]

Description Y41E3.12 /REP_DB=WormBase Gene ID /WP=CE18380 /TR=Q9U2H7 /GB=CAB63362.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 03      6grp_cgc > 56      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 12.1
(-1.9)
A 		4.5
(-2.9)
A 		3.8
(-3)
A 		50.7
(3)
A 		47
B 9.6
(-2.6)
A 		8.7
(-2.6)
A 		3.9
(-3)
A 		83.9
(3)
A 		80
C 11.4
(-2.3)
A 		4.2
(-2.9)
A 		3.1
(-3)
A 		71.5
(3)
A 		68
avr 11
(-2.3) 		5.8
(-2.8) 		3.6
(-3) 		68.7
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 10.4
(1.7)
A 		7.6
(-0.1)
A 		3.2
(-3)
A 		12.4
(3)
A 		10
(1.4)
A 		6.3
(-1)
A 		9
B 3.2
(-2.5)
A 		2.8
(-3)
A 		4.8
(-0.5)
A 		7
(2.3)
A 		4.9
(-0.4)
A 		7.6
(3)
A 		5
C 7.5
(-2.8)
A 		9.4
(-2.5)
A 		53.5
(3)
A 		9.5
(-2.5)
A 		5.5
(-3)
A 		28.5
(-0.1)
A 		48
avr 7
(-2.8) 		6.6
(-3) 		20.5
(3) 		9.6
(-1.7) 		6.8
(-2.9) 		14.1
(0.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.4
(0.2)
A 		1
(-3)
A 		1
(-3)
A 		7.4
(3)
A 		6
B 3.1
(-2.2)
A 		2.2
(-2.5)
A 		0.9
(-3)
A 		17.9
(3)
A 		17
C 3.8
(-1.5)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		12.1
(3)
A 		11
avr 3.8
(-1.5) 		1.5
(-2.7) 		1
(-3) 		12.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.9
(-0)
A 		2.7
(2)
A 		0.7
(-3)
A 		3.1
(3)
A 		3
(2.8)
A 		1.5
(-1)
A 		2
B 1.1
(-2.4)
A 		0.9
(-3)
A 		1.2
(-2.1)
A 		1.9
(0.2)
A 		2
(0.5)
A 		2.8
(3)
A 		2
C 2.8
(-2.5)
A 		2.9
(-2.4)
A 		13.6
(3)
A 		1.9
(-2.9)
A 		1.8
(-3)
A 		9.5
(0.9)
A 		12
avr 1.9
(-3) 		2.2
(-2.5) 		5.2
(3) 		2.3
(-2.3) 		2.3
(-2.3) 		4.6
(1.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9368
Sequence Type Exemplar sequence
Representative Public ID Y41E3.12 NCBI
Target Description Y41E3.12 /REP_DB=WormBase Gene ID /WP=CE18380 /TR=Q9U2H7 /GB=CAB63362.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070418 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-47) (srt-47) mRNA, complete cds. 11/11 None
Y41E3.12 ENSEMBL cdna:known chromosome:CEL140:IV:15049373:15053333:-1 gene:Y41E3.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001445 7/11 Cross Hyb Matching Probes None
GENEFINDER00000001462 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15049378-15053339(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-47
Ensembl Y41E3.12
Entrez Gene 189832 Entrez gene
SwissProt Q9U2H7 EMBL-EBI
WormBase CE35659 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63362 Hypothetical protein Y41E3.12 [Caenorhabditis elegans] ref|NP_502819.2| Serpentine Receptor, class T family member (srt-47) [Caenorhabditis elegans] 0.0
blast CAE68175 Hypothetical protein CBG13834 [Caenorhabditis briggsae] 1.0E-147
blast CAE68187 Hypothetical protein CBG13847 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 7.7E-107
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502819.2 7 37-59,71-93,108-130,151-173,204-223,236-258,268-290
Y41E3.12 7 37-59,71-93,108-130,151-173,204-223,236-258,268-290
Sequence
Target Sequence 
>C. ELEGANS:180769_AT
gcatggcgtgtgcaactaccgtatccctattcctaaatcgtgtcataagccttgcattcc
acgaatacgcggattccatcgaaaaacgactcgcctatatttccatcttattctgtttct
catatgctttctatattttcatgttcaccccttcaattgtctataattccgttttcttgg
catggatcccggatccactttcagagttgaagccgagtaaggaggctgctgcaatgtaca
aaaacgttccacaagcctggaataattggatattcgtatcttgcatgttcattttattct
cgatttattgtgcaatggtgaagaaaatcgctcgagggcagaagtcgaaggcctcaatgg
cgattttcttccaatgtgcaataatctgtttcttcaatactgtctccgctatggtctaca
atgcagttgcattcataacccccgatttctggatccttctgctcggtcaactgtgctggt
ccatcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGGCGTGTGCAACTACCGTATC 416 309 377 Antisense
GTATCCCTATTCCTAAATCGTGTCA 329 455 397 Antisense
GTCATAAGCCTTGCATTCCACGAAT 96 467 418 Antisense
AAAAACGACTCGCCTATATTTCCAT 123 129 458 Antisense
TATTTCCATCTTATTCTGTTTCTCA 182 663 474 Antisense
TTCTATATTTTCATGTTCACCCCTT 242 691 505 Antisense
TTCCGTTTTCTTGGCATGGATCCCG 63 699 543 Antisense
GGCCTCAATGGCGATTTTCTTCCAA 333 543 726 Antisense
TGTCTCCGCTATGGTCTACAATGCA 2 559 777 Antisense
ATTCATAACCCCCGATTTCTGGATC 259 11 807 Antisense
GTCAACTGTGCTGGTCCATCAATCA 679 463 842 Antisense
Sequence Source Affymetrix Proprietary Database