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[180768_at]

Description F38E9.1 /REP_DB=WormBase Gene ID /WP=CE28305 /TR=Q20177 /GB=AAA93349.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 46      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 48.8
(3)
A 		32.5
(0.8)
A 		4.9
(-3)
A 		16.2
(-1.5)
A 		44
B 84.2
(3)
P 		41.8
(-1.5)
A 		48.1
(-0.8)
A 		27.4
(-3)
A 		57
C 65.9
(3)
P 		41.5
(-1.4)
A 		32.6
(-3)
A 		36
(-2.4)
A 		33
avr 66.3
(3) 		38.6
(-1.2) 		28.5
(-2.7) 		26.5
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 61.2
(3)
A 		13.9
(-3)
A 		28.9
(-1.1)
A 		32.2
(-0.7)
A 		43.2
(0.7)
A 		18.1
(-2.5)
A 		47
B 13.2
(-1.8)
A 		13.9
(-1.7)
A 		5.5
(-3)
A 		38.5
(2.3)
A 		22.6
(-0.3)
A 		43.2
(3)
A 		38
C 19.1
(-3)
A 		30.5
(-1.8)
A 		40.1
(-0.8)
A 		32
(-1.6)
A 		76.4
(3)
P 		31.8
(-1.7)
A 		57
avr 31.2
(-0.5) 		19.4
(-3) 		24.8
(-1.8) 		34.2
(0.2) 		47.4
(3) 		31
(-0.5) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 17.8
(3)
A 		7.1
(-0.9)
A 		1.3
(-3)
A 		2.4
(-2.6)
A 		17
B 26.9
(3)
P 		10.3
(-1.7)
A 		11.1
(-1.5)
A 		5.8
(-3)
A 		21
C 21.8
(3)
P 		11.9
(-0.8)
A 		11.3
(-1)
A 		6.1
(-3)
A 		16
avr 22.2
(3) 		9.8
(-1.3) 		7.9
(-1.9) 		4.8
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.3
(1.8)
A 		5
(-2.6)
A 		6.3
(-1.7)
A 		8.2
(-0.3)
A 		13
(3)
A 		4.4
(-3)
A 		9
B 4.6
(-1.7)
A 		4.6
(-1.7)
A 		1.3
(-3)
A 		10.2
(0.6)
A 		9.2
(0.2)
A 		16.1
(3)
A 		15
C 7.1
(-2.8)
A 		9.3
(-2)
A 		10.2
(-1.8)
A 		6.4
(-3)
A 		24.7
(3)
P 		10.7
(-1.6)
A 		18
avr 7.7
(-1.9) 		6.3
(-2.8) 		5.9
(-3) 		8.3
(-1.5) 		15.6
(3) 		10.4
(-0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180768_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17647
Sequence Type Exemplar sequence
Representative Public ID F38E9.1 NCBI
Target Description F38E9.1 /REP_DB=WormBase Gene ID /WP=CE28305 /TR=Q20177 /GB=AAA93349.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078272(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078272 NCBI Caenorhabditis elegans F38E9.1 (F38E9.1) mRNA, complete cds. 11/11 None
SNAP00000030341 ENSEMBL cdna:SNAP chromosome:CEL140:X:16471285:16474272:1 11/11 None
GENEFINDER00000030342 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16471285:16474272:1 11/11 None
F38E9.1 ENSEMBL cdna:known chromosome:CEL140:X:16471285:16474863:1 gene:F38E9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16471284-16474272(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38E9.1
Entrez Gene 181712 Entrez gene
SwissProt Q20177 EMBL-EBI
WormBase CE28305 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.16227.1.S1_AT similar to phosphatidylinositol-specific phospholipase C, X domain containing 2 cfa
CANINE_2:CFAAFFX.16227.1.S1_S_AT similar to phosphatidylinositol-specific phospholipase C, X domain containing 2 cfa
CANINE_2:CFAAFFX.16228.1.S1_AT similar to phosphatidylinositol-specific phospholipase C, X domain containing 2 cfa
DROSOPHILA_2:1633716_AT dm
DROSGENOME1:146533_AT dm
CHICKEN:GGA.16305.2.S1_A_AT similar to MGC53544 protein gga
U133_X3P:HS2.350798.1.S1_3P_AT phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HG-U133_PLUS_2:1553281_AT phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HU35KSUBB:RC_T78487_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HU35KSUBB:RC_R67878_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
U133_X3P:HS.6594.0.A1_3P_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
U133_X3P:HS.215047.0.S1_3P_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HG-U133_PLUS_2:233478_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HG-U133B:233478_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HG-U133_PLUS_2:235230_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HG-U133B:235230_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HG-U95B:42858_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HG-U95B:46606_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
HG-U95C:61532_AT Phosphatidylinositol-specific phospholipase C, X domain containing 2 hs
Protein Similarities
Method ID Description E-Value
blast AAA93349 Hypothetical protein F38E9.1 [Caenorhabditis elegans] ref|NP_510673.1| F38E9.1 [Caenorhabditis elegans] 0.0
blast CAE69966 Hypothetical protein CBG16362 [Caenorhabditis briggsae] 1.0E-168
blast CAE69966 Hypothetical protein CBG16362 [Caenorhabditis briggsae] 1.0E-162
blast CAE69966 Hypothetical protein CBG16362 [Caenorhabditis briggsae] 1.0E-159
blast XP_849099 PREDICTED: similar to phosphatidylinositol-specific phospholipase C, X domain containing 2 [Canis familiaris] 2.0E-27
blast XP_849099 PREDICTED: similar to phosphatidylinositol-specific phospholipase C, X domain containing 2 [Canis familiaris] 2.0E-26
Sequence
Target Sequence 
>C. ELEGANS:180768_AT
aggagtgtgttgaacgagcccctggaagatggagaaaacgagccggaatttttaattgaa
gaaatttttgacgaattcgaagttcccgtttcttcaattcccccgaagaaaccaatccgt
acaagcgtcatggttcaacaagtggaaatggttttagacgaaagtacatcttccgaagac
acctctttaattctcccaagatccccaattccgccaccaaaacccaaaagattttcgcaa
cgaattcctctggtgatggaggttcagcagattccagatgatgattttccatactcagat
gcaccttgcgtcccattctccagaagcagtgacactcccgttcggattgctctaccagtt
actgaggaagagctacgattggctgctcttggggaatatcctcgttatggatcgcagaga
tcacagagatcacagctttccccaaggattgaagagaagaaagacgataatttgaatgga
gttgaggagaaggacgggtctgatgatgatgaagctccgctcatatctcatgaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGTGTGTTGAACGAGCCCCTGG 172 57 997 Antisense
TGACGAATTCGAAGTTCCCGTTTCT 676 563 1065 Antisense
GAAACCAATCCGTACAAGCGTCATG 59 359 1104 Antisense
CGAAGACACCTCTTTAATTCTCCCA 140 253 1170 Antisense
TTTCGCAACGAATTCCTCTGGTGAT 670 669 1229 Antisense
GGAGGTTCAGCAGATTCCAGATGAT 62 517 1254 Antisense
TTTCCATACTCAGATGCACCTTGCG 197 669 1282 Antisense
TCGGATTGCTCTACCAGTTACTGAG 700 605 1338 Antisense
GATTGGCTGCTCTTGGGGAATATCC 147 435 1373 Antisense
GATCACAGAGATCACAGCTTTCCCC 442 421 1415 Antisense
AAGCTCCGCTCATATCTCATGAAGT 63 151 1508 Antisense
Sequence Source Affymetrix Proprietary Database